Browse Element(s) Details


Os.37672.1.S1_at

Description gb:AK061522.1
DB_XREF= gi:32971540
TID=Os.37672.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B06, full insert sequence.
FL= gb:AK061522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4438011/1160S ribosomal protein L10a-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os08g44380Os.37672.1.S1_at11/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44380Os.12334.1.S1_x_at5/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44390Os.37533.1.S1_at11/118+27798872..27801533EF hand family protein, expressed
LOC_Os08g44400Os.5986.1.S1_at11/118+27805389..27808316Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37672.1.S1_at--215--2371Chr08:27798643..27798667 (25 bp)
AAACCGTACAGGGTGTTCTAAGCTG
LOC_Os08g44380
Os.37672.1.S1_at--161--4731Chr08:27798664..27798688 (25 bp)
GCTGGTTTGCTCCACATTGAAGCTG
LOC_Os08g44380
Os.37672.1.S1_at--123--7911Chr08:27798703..27798727 (25 bp)
GGTTGAACTGAGCTTGTCCTTACAT
LOC_Os08g44380
Os.37672.1.S1_at--6--7271Chr08:27798718..27798742 (25 bp)
GTCCTTACATTAGATCTGCTTGCAC
LOC_Os08g44380
Os.37672.1.S1_at--202--1291Chr08:27798729..27798753 (25 bp)
AGATCTGCTTGCACTGATATCAGTT
LOC_Os08g44380
Os.37672.1.S1_at--937--6491Chr08:27798744..27798768 (25 bp)
GATATCAGTTTTGTGCTTACCCAAG
LOC_Os08g44380
Os.37672.1.S1_at--953--6931Chr08:27798800..27798824 (25 bp)
GTAGTTTATTCAGTGCACTTCGGAT
LOC_Os08g44380
Os.37672.1.S1_at--1076--8011Chr08:27798871..27798895 (25 bp)
GGAGAATTGGTGTGCCAACTACCGT
LOC_Os08g44380
Os.37672.1.S1_at--43--4791Chr08:27798938..27798962 (25 bp)
GCTCGCAAGAATCGTGCAGCATCGA
LOC_Os08g44380
Os.37672.1.S1_at--405--531Chr08:27798958..27798982 (25 bp)
ATCGAAATCATGATGCGGCGCCGTT
LOC_Os08g44380
Os.37672.1.S1_at--604--4431Chr08:27798977..27799001 (25 bp)
GCCGTTTGACCCCATTTTTGAAGAT
LOC_Os08g44380
Target Sequence 
AAACCGTACAGGGTGTTCTAAGCTGGTTTGCTCCACATTGAAGCTGATAAGATGCTGGGCGGTTGAACTGAGCTTGTCCT
TACATTAGATCTGCTTGCACTGATATCAGTTTTGTGCTTACCCAAGAGAACATCGAGATATGTTATNATATTTTGTAGTA
GTTTATTCAGTGCACTTCGGATTTATGCAAATGAGGCTTGTGTTATTTATGAATAGTTTCGTTCATGGGGAGAATTGGTG
TGCCAACTACCGTNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAAATGTTGCCGCTGCTCGCAAGAATCGTGCAGCATCGA
AATCATGATGCGGCGCCGTTTGACCCCATTTTTGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis