Browse Element(s) Details


Os.37917.1.S1_at

Description gb:AK101955.1
DB_XREF= gi:32987164
TID=Os.37917.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1773_H01.5 (OJ1773_H01.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075K22, full insert sequence.
FL= gb:AK101955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3780010/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37750Os.38103.1.S1_at11/117+22633066..22643973guanine nucleotide exchange family protein, putative, expressed
LOC_Os07g37760Os.53924.1.S1_at11/117+22646672..22652656lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os07g37770Os.12042.1.S1_at8/117+22652964..2265489440S ribosomal protein S11, putative, expressed
LOC_Os07g37780Os.12042.1.S1_at9/117+22655551..2265748040S ribosomal protein S11, putative, expressed
LOC_Os07g37790Os.31773.2.S1_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37790Os.31773.2.S1_x_at10/117+22657868..22661984Cell differentiation protein rcd1, putative, expressed
LOC_Os07g37800Os.37917.1.S1_at10/117+22664414..22668455Bromodomain containing protein, expressed
LOC_Os07g37810Os.44473.1.S1_at8/117+22670152..22675055Leucine Rich Repeat family protein, expressed
LOC_Os07g37820OsAffx.16601.1.S1_at11/117+22683081..22684020hypothetical protein
LOC_Os07g37830Os.44471.1.S1_a_at11/117+22687206..22691594Peptidyl-prolyl cis-trans isomerase TLP38, chloroplast precursor, putative, expressed
LOC_Os07g37840Os.44471.2.S1_at11/117+22691463..22692770hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37917.1.S1_at--182--2791Chr07:22664971..22664995 (25 bp)
AAGAGAGCGCAAGCATGCCCTCTAA
LOC_Os07g37800
Os.37917.1.S1_at--786--2691Chr07:22664961..22664985 (25 bp)
AAGCATGCCCTCTAAGAGTTGTGGA
LOC_Os07g37800
Os.37917.1.S1_at--1120--3391Chr07:22664926..22664950 (25 bp)
CAGCAACTGCCCCTTTAGTGAAGAA
LOC_Os07g37800
Os.37917.1.S1_at--600--5331Chr07:22664878..22664902 (25 bp)
GAAGTCATGGGCCTCATGATGCAAA
LOC_Os07g37800
Os.37917.1.S1_at--916--531Chr07:22664793..22664817 (25 bp)
ATCGCGTGGTGGTTCATCAGTGACA
LOC_Os07g37800
Os.37917.1.S1_at--185--1451Chr07:22664695..22664719 (25 bp)
AGAAGCGTGCTGCTGCACAGCAAGA
LOC_Os07g37800
Os.37917.1.S1_at--869--9011Chr07:22664682..22664706 (25 bp)
TGCACAGCAAGATAGCCCTAACAAA
LOC_Os07g37800
Os.37917.1.S1_at--638--1711Chr07:22664577..22664601 (25 bp)
ACCACATAGTGTCGTCTCTTTCAGT
LOC_Os07g37800
Os.37917.1.S1_at--1131--8691Chr07:22664568..22664592 (25 bp)
TGTCGTCTCTTTCAGTGTTTACTTG
LOC_Os07g37800
Os.37917.1.S1_at--1117--6931Chr07:22664497..22664521 (25 bp)
GTAGTACTGTATTTCCTGTTGTTGT
LOC_Os07g37800
Os.37917.1.S1_at--95--251Chr07:22664414..22664438 (25 bp)
ATATAGTATATCTCTTGCTTTGTGC
NONE
Target Sequence 
AAGAGAGCGCAAGCATGCCCTCTAAGAGTTGTGGAGTAACAGGAGCAGCAACTGCCCCTTTAGTGAAGAAGAACACCCGA
CCCNTNCAGCCNTGGAAGTCATGGGCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAANGTNACTGT
CAAGCAGGGTGAGGCCNAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCNAGAGAAATCCACC
GGCCAAGAAGAGAGGNGTTGGGCGGCCTCCAAAGAATGGGCNAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAA
GGCAGGAAGAGGACCCGACGCTGAACTTCGGNCTCAAAATGCCCAAATATACAAAACTGTGTACAGNACAGCGTATAGCT
AGNACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGNCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCA
GGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGNATAGGAAAGAACATTTTTATAGGCNAGAAACTATCAA
CTTAGATATATATAGTATATCTCTTGCTTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis