Browse Element(s) Details


Os.37946.1.S1_at

Description gb:AK059909.1
DB_XREF= gi:32969927
TID=Os.37946.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C06, full insert sequence.
FL= gb:AK059909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0583011/11Ribulose bisphosphate carboxylase, small subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05790Os.54322.1.S1_x_at10/112+2858631..2861703hypothetical protein
LOC_Os02g05800OsAffx.11909.1.S1_at11/112+2863335..2864534hypothetical protein
LOC_Os02g05810Os.34785.1.S1_a_at11/112+2865052..2869029expressed protein
LOC_Os02g05820Os.52804.1.S1_at11/112+2869692..2874060Protein kinase domain containing protein, expressed
LOC_Os02g05830Os.37946.1.S1_at11/112+2874932..2876450Ribulose bisphosphate carboxylase, small subunit family protein, expressed
LOC_Os02g05840Os.10052.1.S1_at11/112+2876557..2882175expressed protein
LOC_Os02g05850NANA2+2887326..2892035transposon protein, putative, unclassified
LOC_Os02g05860NANA2+2893006..2895238retrotransposon protein, putative, unclassified
LOC_Os02g05870Os.47932.1.S1_at10/112+2898895..2903749expressed protein
LOC_Os02g05870Os.23622.1.A1_at1/112+2898895..2903749expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009573cellular_componentribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37946.1.S1_at--299--1291Chr02:2875685..2875709 (25 bp)
AGATCCACCGGAGCAACAGCCGGAT
LOC_Os02g05830
Os.37946.1.S1_at--1121--4051Chr02:2875754..2875778 (25 bp)
CGATGTTCGGATGCTCTGACGCGGC
LOC_Os02g05830
Os.37946.1.S1_at--528--1131Chr02:2875862..2875886 (25 bp)
AGTGCCAGTGCATGTCCTTCGTCGT
LOC_Os02g05830
Os.37946.1.S1_at--865--7791Chr02:2875923..2875947 (25 bp)
GGTCGCCGGAGCTGAATGAACCAAG
LOC_Os02g05830
Os.37946.1.S1_at--244--5431Chr02:2875940..2875964 (25 bp)
GAACCAAGGTGTTCAGTTCATGTTC
LOC_Os02g05830
Os.37946.1.S1_at--1107--551Chr02:2875965..2875989 (25 bp)
ATCCTCGCTTCGATGATCATCAGTC
LOC_Os02g05830
Os.37946.1.S1_at--1098--9571Chr02:2876030..2876054 (25 bp)
TCTTGCTCACTTGCATGTGCTGTAC
LOC_Os02g05830
Os.37946.1.S1_at--574--3511Chr02:2876043..2876067 (25 bp)
CATGTGCTGTACCACTTCTTTCAGT
LOC_Os02g05830
Os.37946.1.S1_at--538--3891Chr02:2876096..2876120 (25 bp)
CTGTGATGTACTAATGTTGCTTCGA
LOC_Os02g05830
Os.37946.1.S1_at--959--291Chr02:2876144..2876168 (25 bp)
ATAGCATCCATCCAACCAGTTATCT
LOC_Os02g05830
Os.37946.1.S1_at--608--7751Chr02:2876199..2876223 (25 bp)
GGTGTTCTATGTACCTCTTCTTCCA
LOC_Os02g05830
Target Sequence 
AGATCCACCGGAGCAACAGCCGGATGCCGGGGTACTACGACGGGAGGTACTGGACGCTGTGGAAGCTGCCGATGTTCGGA
TGCTCTGACGCGGCGGCGGTGCTCCGGGAGGTGGAGGAATGCCGGAGGGAGTACCCGGACGCCTTCATCCGCCTCATCGC
CTTCGACAGCAGCCGCCAGTGCCAGTGCATGTCCTTCGTCGTCCACAAGCCGCCGTCGGCCGCCGCTTCTCCGGCCACGG
TCGCCGGAGCTGAATGAACCAAGGTGTTCAGTTCATGTTCATCCTCGCTTCGATGATCATCAGTCACAGCATCCATCCAA
CCAGTTTCCTTCCTCTTCTTCGGTCTCTTGCTCACTTGCATGTGCTGTACCACTTCTTTCAGTTCAACTTCAACCTCATC
TTTGATGACTACTGTGATGTACTAATGTTGCTTCGAGTATAATGAGCACAATGATGATCATAGCATCCATCCAACCAGTT
ATCTTCCTCTTCTTCAGCATCATCTTCATTTGCANGGTGTTCTATGTACCTCTTCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis