Browse Element(s) Details


Os.38014.1.S1_at

Description gb:AK103210.1
DB_XREF= gi:32988419
TID=Os.38014.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1066G12.15 (B1066G12.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122L17, full insert sequence.
FL= gb:AK103210.1 gb:AK065805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1410011/11folate/biopterin transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed
LOC_Os01g14100Os.38014.1.S1_at11/111+7891763..7897352folate/biopterin transporter family protein, expressed
LOC_Os01g14110OsAffx.11044.1.S1_x_at8/111+7900615..7901557expressed protein
LOC_Os01g14120OsAffx.11045.1.S1_at11/111+7921197..7921589hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008517molecular_functionfolic acid transporter activity
GO:0015231molecular_function5-formyltetrahydrofolate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38014.1.S1_at--803--6131Chr01:7892244..7892268 (25 bp)
GAGGGAACACTGTTCGCTCTGTTCA
LOC_Os01g14100
Os.38014.1.S1_at--351--7271Chr01:7892218..7892242 (25 bp)
GTCCATCAACAACTTTGGCTCGACT
LOC_Os01g14100
Os.38014.1.S1_at--618--3791Chr01:7892200..7892224 (25 bp)
CTCGACTTTAGGCTCATTCTTGGGA
LOC_Os01g14100
Os.38014.1.S1_at--376--8311Chr01:7892173..7892197 (25 bp)
GGCTCTGGCGTCAGCTTTAAGCATC
LOC_Os01g14100
Os.38014.1.S1_at--937--2691Chr01:7892155..7892179 (25 bp)
AAGCATCTCATCAGCACAATTCGAC
LOC_Os01g14100
Os.38014.1.S1_at--925--2231Chr01:7892140..7892164 (25 bp)
ACAATTCGACAATCTGGCGCTCGGC
LOC_Os01g14100
Os.38014.1.S1_at--57--4591Chr01:7892124..7892148 (25 bp)
GCGCTCGGCTTAGGTGTACAGCTGA
LOC_Os01g14100
Os.38014.1.S1_at--102--8751Chr01:7892110..7892134 (25 bp)
TGTACAGCTGATTGGCACTCTCCTA
LOC_Os01g14100
Os.38014.1.S1_at--52--4331Chr01:7892009..7892033 (25 bp)
CCATCATTTTCTTTTTTCCGGATTG
LOC_Os01g14100
Os.38014.1.S1_at--765--10291Chr01:7891995..7892019 (25 bp)
TTTCCGGATTGGTTTGCAGTCTTAA
LOC_Os01g14100
Os.38014.1.S1_at--833--8491Chr01:7891789..7891813 (25 bp)
TGGAAGTGACATTTTTTCCCCGGAG
LOC_Os01g14100
Target Sequence 
GAGGGAACACTGTTCGCTCTGTTCATGTCCATCAACAACTTTGGCTCGACTTTAGGCTCATTCTTGGGAGCGGCTCTGGC
GTCAGCTTTAAGCATCTCATCAGCACAATTCGACAATCTGGCGCTCGGCTTAGGTGTACAGCTGATTGGCACTCTCCTAC
CGGTTGGATTTTTGTTTCTGATACCAAAGGAAGTTACAGGGCTAACGTCATAGGAAGAGGGATACACATACCTGACCATC
ATTTTCTTTTTTCCGGATTGGTTTGCAGTCTTAAGTGCTGGAGTAATTCAGAACAGAAAAATTAAAGGTAGCATGATGAA
GGTACTAAGGTAGTCAATTCTGTTGAAAGATGTATACATGAATACACTAGAGTGAGGAAGAATACAAATAGACAGTAGAT
GGTAGGCATTGCCAAGAGTTGAGCAAAGGTTATGTACCTGCGTAATGTACTACAGTGGAAGTGACATTTTTTCCCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis