Browse Element(s) Details


Os.36458.2.S1_x_at

Description gb:NM_188726.1
DB_XREF= gi:34904535
GEN=B1066G12.13
TID=Os.36458.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1066G12.13 (B1066G12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1066G12.13 (B1066G12.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1408011/11lipase class 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed
LOC_Os01g14100Os.38014.1.S1_at11/111+7891763..7897352folate/biopterin transporter family protein, expressed
LOC_Os01g14110OsAffx.11044.1.S1_x_at8/111+7900615..7901557expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36458.2.S1_x_at--737--9451Chr01:7877507..7877531 (25 bp)
TCGGCGATCGACAAGCGTGGCAGCA
LOC_Os01g14080
Os.36458.2.S1_x_at--855--4991Chr01:7877436..7877460 (25 bp)
GCAGGTTGGCAAGACTTTGGCTCAA
LOC_Os01g14080
Os.36458.2.S1_x_at--273--5271Chr01:7877396..7877420 (25 bp)
GAATGCCATCTGTTCAATCCACCAT
LOC_Os01g14080
Os.36458.2.S1_x_at--830--1431Chr01:7877280..7877304 (25 bp)
AGAACTTTCTCACCCAACAGAGGAT
LOC_Os01g14080
Os.36458.2.S1_x_at--164--6031Chr01:7877205..7877229 (25 bp)
GAGATGGGTGCCAAACCTGTACATA
LOC_Os01g14080
Os.36458.2.S1_x_at--557--4731Chr01:7877176..7877200 (25 bp)
GCTGTGACTACATTTGCTGCTTTTA
LOC_Os01g14080
Os.36458.2.S1_x_at--643--8711Chr01:7877136..7877160 (25 bp)
TGTCGCCACTGTTACTGCCGAGAAG
LOC_Os01g14080
Os.36458.2.S1_x_at--274--711Chr01:7877110..7877134 (25 bp)
ATGATGGCCATTCTGGGACTCATTC
LOC_Os01g14080
Os.36458.2.S1_x_at--641--7631Chr01:7877096..7877120 (25 bp)
GGGACTCATTCCAAGCTGTTTGTGA
LOC_Os01g14080
Os.36458.2.S1_x_at--725--1231Chr01:7877053..7877077 (25 bp)
AGTTCCTTGAAGCTCATGGGTTGCA
LOC_Os01g14080
Os.36458.2.S1_x_at--79--9231Chr01:7877002..7877026 (25 bp)
TCCAGTTGGCCGTTCATGATAGCAA
LOC_Os01g14080
Target Sequence 
TCGGCGATCGACAAGCGTGGCAGCAACAATGTGTGCATTGCTGGGCATTCCCTGGGGGCAGGCTTTGCTCTGCAGGTTGG
CAAGACTTTGGCTCAAGATGGGATCTTTGTAGAATGCCATCTGTTCAATCCACCATCAGTCTCACTTGGCATGGGGCTGA
GGAAACTTCAGGAGAAAGCCGGCAAGGTCTTGAAGAGATATGTCAGTGGAAGTTCTTCAAATGCTACAGAACTTTCTCAC
CCAACAGAGGATGGAGGAGCAGCTTCTGAAATTGGAGAAGAAAAGCTGATCAAGGAGGTAAAGAGATGGGTGCCAAACCT
GTACATAAACAGCTGTGACTACATTTGCTGCTTTTATGCTGATCGCAGCGGTGTCGCCACTGTTACTGCCGAGAAGCATG
ATGGCCATTCTGGGACTCATTCCAAGCTGTTTGTGATTGCCAAAGGACCAAAGAAGTTCCTTGAAGCTCATGGGTTGCAG
CAATGGTGGTCAGATGATTATGAACTCCAGTTGGCCGTTCATGATAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36458.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis