Browse Element(s) Details


Os.36458.1.S1_at

Description gb:AK063344.1
DB_XREF= gi:32973362
TID=Os.36458.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36458 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1066G12.13 (B1066G12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B04, full insert sequence.
FL= gb:AK063344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1408011/11lipase class 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed
LOC_Os01g14100Os.38014.1.S1_at11/111+7891763..7897352folate/biopterin transporter family protein, expressed
LOC_Os01g14110OsAffx.11044.1.S1_x_at8/111+7900615..7901557expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36458.1.S1_at--1084--5211Chr01:7876925..7876949 (25 bp)
GAATTTTGTAAATGCATCGTGTTCT
LOC_Os01g14080
Os.36458.1.S1_at--276--2291Chr01:7876916..7876940 (25 bp)
AAATGCATCGTGTTCTTTTGCTTCT
LOC_Os01g14080
Os.36458.1.S1_at--209--10391Chr01:7876901..7876925 (25 bp)
TTTTGCTTCTCTAGCCAAGAAAATG
LOC_Os01g14080
Os.36458.1.S1_at--988--4891Chr01:7876897..7876921 (25 bp)
GCTTCTCTAGCCAAGAAAATGTGAA
LOC_Os01g14080
Os.36458.1.S1_at--24--7351Chr01:7876877..7876901 (25 bp)
GTGAATTTTTCTTTTGAATGGCGCA
LOC_Os01g14080
Os.36458.1.S1_at--117--10331Chr01:7876870..7876894 (25 bp)
TTTCTTTTGAATGGCGCATGGCACA
LOC_Os01g14080
Os.36458.1.S1_at--948--2951Chr01:7876861..7876885 (25 bp)
AATGGCGCATGGCACAAGCCTCGTA
LOC_Os01g14080
Os.36458.1.S1_at--240--851Chr01:7876853..7876877 (25 bp)
ATGGCACAAGCCTCGTACATTCTTT
LOC_Os01g14080
Os.36458.1.S1_at--377--5131Chr01:7876850..7876874 (25 bp)
GCACAAGCCTCGTACATTCTTTTTT
LOC_Os01g14080
Os.36458.1.S1_at--765--10371Chr01:7876822..7876846 (25 bp)
TTTTGACCTGGAAAAACAATCCCAG
LOC_Os01g14080
Os.36458.1.S1_at--1129--5511Chr01:7876812..7876836 (25 bp)
GAAAAACAATCCCAGTGAGATCGCT
LOC_Os01g14080
Target Sequence 
GAATTTTGTAAATGCATCGTGTTCTTTTGCTTCTCTAGCCAAGAAAATGTGAATTTTTCTTTTGAATGGCGCATGGCACA
AGCCTCGTACATTCTTTTTTTTTTTTTGACCTGGAAAAACAATCCCAGTGAGATCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis