Browse Element(s) Details


Os.52301.1.S1_at

Description gb:AK066245.1
DB_XREF= gi:32976263
TID=Os.52301.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013051L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051L10, full insert sequence.
FL= gb:AK066245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1407010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed
LOC_Os01g14100Os.38014.1.S1_at11/111+7891763..7897352folate/biopterin transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52301.1.S1_at--377--9631Chr01:7874995..7875019 (25 bp)
TCATGTTTGAAGCATCTCTGCTCTT
LOC_Os01g14070
Os.52301.1.S1_at--720--10511Chr01:7875018..7875042 (25 bp)
TTCACCAGTTGCACGCTTGCTTGAG
LOC_Os01g14070
Os.52301.1.S1_at--186--4931Chr01:7875032..7875056 (25 bp)
GCTTGCTTGAGCCAATACCATTATA
LOC_Os01g14070
Os.52301.1.S1_at--798--1711Chr01:7875048..7875072 (25 bp)
ACCATTATAATCCACACGAGTTTTG
LOC_Os01g14070
Os.52301.1.S1_at--1104--8111Chr01:7875072..7875096 (25 bp)
GGACATGTATGTAGCCAGAGCATAT
LOC_Os01g14070
Os.52301.1.S1_at--855--1131Chr01:7875114..7875138 (25 bp)
AGTCCAGAGAACATTGTCGTACTTT
LOC_Os01g14070
Os.52301.1.S1_at--657--6331Chr01:7875156..7875180 (25 bp)
GATGCATATTCTCTTGGTAACACCA
LOC_Os01g14070
Os.52301.1.S1_at--589--6571Chr01:7875235..7875259 (25 bp)
GTTATCTAGTTTCAGTCGTACCTTG
LOC_Os01g14070
Os.52301.1.S1_at--779--3151Chr01:7875273..7875297 (25 bp)
AATTCCAGTCACTCTAATGGCATTT
LOC_Os01g14070
Os.52301.1.S1_at--519--8871Chr01:7875301..7875325 (25 bp)
TGATGTAACAGGCTGTCCTTGCCAC
LOC_Os01g14070
Os.52301.1.S1_at--325--4151Chr01:7875546..7875570 (25 bp)
CGCCTTTTGAATACCTACATCTAAT
NONE
Target Sequence 
TCATGTTTGAAGCATCTCTGCTCTTCACCAGTTGCACGCTTGCTTGAGCCAATACCATTATAATCCACACGAGTTTTGGA
CATGTATGTAGCCAGAGCATATATATACATGAAGGATCAAGTCCAGAGAACATTGTCGTACTTTAACATAATTCGTTCAT
TGATGCATATTCTCTTGGTAACACCAACAGCTAATGTAATGATAAGTGGAAATGGCTTTGATGAAATTCTAGATTGATCA
GTTATCTAGTTTCAGTCGTACCTTGTATTTTTTAAAAAAATTCCAGTCACTCTAATGGCATTTTTATGATGTAACAGGCT
GTCCTTGCCACCATTGCTATAATAATCGGAGCTACCGCTGGAGCTGCTTAATTACATTTTACATTGTGTCGTTATTGTAC
ATACTGTATATCTCATGGATGCACAAACATTTAGTATGTCGTCTGCGATGTACCTTATTCAGCTTTTCTTTTCCGTTTGA
TTTTTTAATGTTTAACAAGGAGAACGGATGCCCTTGTTCATGGTCATAAATAAATCAGGTTGAGACGATTTCGCCTTTTG
AATACCTACATCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis