Browse Element(s) Details


Os.53640.1.S1_at

Description gb:AK073692.1
DB_XREF= gi:32983715
TID=Os.53640.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060B05, full insert sequence.
FL= gb:AK073692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g140409/11D-tyrosyl-tRNA deacylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13980Os.21387.3.S1_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980OsAffx.18435.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.36736.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.21387.3.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13990NANA1+7834100..7834990hypothetical protein
LOC_Os01g14000NANA1+7841150..7841460hypothetical protein
LOC_Os01g14010Os.55091.1.S1_at8/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14010Os.19512.2.S1_x_at2/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019478biological_processD-amino acid catabolism
GO:0005737cellular_componentcytoplasm
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53640.1.S1_at--891--5671Chr01:7854895..7854919 (25 bp)
GACTTCTTAATCTCTGTAACTGGTC
LOC_Os01g14040
Os.53640.1.S1_at--253--8751Chr01:7854881..7854905 (25 bp)
TGTAACTGGTCTTCTACCCTTCCTG
LOC_Os01g14040
Os.53640.1.S1_at--822--8971Chr01:7854847..7854871 (25 bp)
TGAACATGGTTATCGCTGTCCCACA
LOC_Os01g14040
Os.53640.1.S1_at--690--8711Chr01:7854831..7854855 (25 bp)
TGTCCCACATCAAGCCATGCAGAAT
LOC_Os01g14040
Os.53640.1.S1_at--124--7871Chr01:7854789..7854813 (25 bp)
GGTTTGAGCAGGAAGAAGCCCTCCA
LOC_Os01g14040
Os.53640.1.S1_at--699--5371Chr01:7854778..7854802 (25 bp)
GAAGAAGCCCTCCAGTGAGCTCGTG
LOC_Os01g14040
Os.53640.1.S1_at--552--9191Chr01:7854755..7854779 (25 bp)
TGCCATGGGTGCTACAAGTCGTGTT
LOC_Os01g14040
Os.53640.1.S1_at--240--1111Chr01:7854739..7854763 (25 bp)
AGTCGTGTTTTCATTTCTCCACTTA
LOC_Os01g14040
Os.53640.1.S1_at--303--10051Chr01:7854689..7854713 (25 bp)
TAGTATTCATTTCGTCTTCAAAGAC
LOC_Os01g14040
Os.53640.1.S1_at--877--9911NONE
TACTGATCTGTCATTCATACACGAA
NONE
Os.53640.1.S1_at--389--251Chr01:7854630..7854653 (24 bp)
ATATCAAATTGATTCAGTTGGCCTG
NONE
Target Sequence 
GACTTCTTAATCTCTGTAACTGGTCTTCTACCCTTCCTGCACGATTTGAACATGGTTATCGCTGTCCCACATCAAGCCAT
GCAGAATTTTGAGTTTGTTTTTGAGGTTTGAGCAGGAAGAAGCCCTCCAGTGAGCTCGTGCCATGGGTGCTACAAGTCGT
GTTTTCATTTCTCCACTTAAATATTGATTACTGGGGAAATATATTAGTATTCATTTCGTCTTCAAAGACATGAATTTTAT
TACTGATCTGTCATTCATACACGAATATCAAATTGATTCAGTTGGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis