Browse Element(s) Details


Os.55091.1.S1_at

Description gb:AK107468.1
DB_XREF= gi:32992677
TID=Os.55091.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B01, full insert sequence.
FL= gb:AK107468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g140108/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13960NANA1+7820053..7824354hypothetical protein
LOC_Os01g13970OsAffx.20387.1.S1_x_at1/111+7825219..7829019retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13980Os.21387.3.S1_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980OsAffx.18435.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.36736.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.21387.3.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13990NANA1+7834100..7834990hypothetical protein
LOC_Os01g14000NANA1+7841150..7841460hypothetical protein
LOC_Os01g14010Os.55091.1.S1_at8/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14010Os.19512.2.S1_x_at2/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55091.1.S1_at--715--1371Chr01:7846054..7846078 (25 bp)
AGAGCGTGCCGTCCGTGTTCAGCAA
LOC_Os01g14010
Os.55091.1.S1_at--424--10051Chr01:7846183..7846207 (25 bp)
TAGTGTCCCCGTTCGAGCCGACCAA
LOC_Os01g14010
Os.55091.1.S1_at--688--2791Chr01:7846248..7846272 (25 bp)
AAGTTCGACGGTGCAGCCCTATTCG
LOC_Os01g14010
Os.55091.1.S1_at--700--9451Chr01:7846300..7846324 (25 bp)
TCGGCGGCGCAATGAGCGAGCTCAC
LOC_Os01g14010
Os.55091.1.S1_at--591--8231Chr01:7846335..7846359 (25 bp)
GGCAACGTGCCTTACGACGTCTTGT
LOC_Os01g14010
Os.55091.1.S1_at--622--191Chr01:7846423..7846447 (25 bp)
ATTTCTTGGGCGTTGGCGTGCAAGC
LOC_Os01g14010
Os.55091.1.S1_at--1148--7331Chr01:7846440..7846464 (25 bp)
GTGCAAGCACTGTGCTCGTCGTCGA
LOC_Os01g14010
Os.55091.1.S1_at--1156--4791Chr01:7846453..7846477 (25 bp)
GCTCGTCGTCGATACATGGGTGGAT
LOC_Os01g14010
Os.55091.1.S1_at--710--10731Chr01:7846490..7846514 (25 bp)
TTGCATGCTAATTCTGTAGCCATGA
NONE
Os.55091.1.S1_at--573--5391Chr01:7846571..7846595 (25 bp)
GAAGCATGCATGCAAGCTCACAAAA
NONE
Os.55091.1.S1_at--753--1451Chr01:7846603..7846627 (25 bp)
AGAAGAGCACCCAATTTAATTTACT
NONE
Target Sequence 
AGAGCGTGCCGTCCGTGTTCAGCAACCAGCAGCACGCGAAGCCCGCGGCGCCCACCGACATGTCCGCGACGGCTCTGCTG
CAGAAGGCCGCGCAGATCGGCGCCGTGACATCCACCGCCGCGATGCCCCTAGTGTCCCCGTTCGAGCCGACCAAGCCCGG
CGGCGCCACCGCCTCACCGGCCGACGAGTGCGGCAAGTTCGACGGTGCAGCCCTATTCGCCGCCGCGAGCCATCACAATG
CCAACCTCGGCGGCGCAATGAGCGAGCTCACGGGGGCCGCCGGCAACGTGCCTTACGACGTCTTGTCGGCGGTGCGCCAC
CATGCCGGCCTGAAGGACGCCGGCGGCGTCGGGAGAGAGGAAACTAGGGATTTCTTGGGCGTTGGCGTGCAAGCACTGTG
CTCGTCGTCGATACATGGGTGGATTTAAACCTTAATTTGCATGCTAATTCTGTAGCCATGAAGAGATTAGTTAGTGCTAA
TTTTGAAGCTATGTAAGCAAGTAAGCTACAGTGGAGTGAAGCATGCATGCAAGCTCACAAAAGGGCTCAAGAAGAGCACC
CAATTTAATTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis