Browse Element(s) Details


Os.23971.2.S1_x_at

Description gb:NM_188724.1
DB_XREF= gi:34904531
GEN=B1066G12.11
TID=Os.23971.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1066G12.11 (B1066G12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1066G12.11 (B1066G12.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1405011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13990NANA1+7834100..7834990hypothetical protein
LOC_Os01g14000NANA1+7841150..7841460hypothetical protein
LOC_Os01g14010Os.55091.1.S1_at8/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14010Os.19512.2.S1_x_at2/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23971.2.S1_x_at--216--8391Chr01:7859683..7859707 (25 bp)
GGCGAGCACGTAATCCTGACACGGA
LOC_Os01g14050
Os.23971.2.S1_x_at--1081--591Chr01:7859629..7859653 (25 bp)
ATGCGCCTACCCCAAAAAGCAGTGG
LOC_Os01g14050
Os.23971.2.S1_x_at--825--10851Chr01:7859590..7859614 (25 bp)
TTGGCTCCTTTTTCCGGAAGAGCTT
LOC_Os01g14050
Os.23971.2.S1_x_at--731--5331Chr01:7859557..7859581 (25 bp)
GAAGTTTCCATGATATTGATCCCGG
LOC_Os01g14050
Os.23971.2.S1_x_at--705--10191Chr01:7859544..7859568 (25 bp)
TATTGATCCCGGTATTCCTACAACG
LOC_Os01g14050
Os.23971.2.S1_x_at--496--1091Chr01:7859517..7859541 (25 bp)
AGGGCCTCAGAGTGCAACAGAGCTT
LOC_Os01g14050
Os.23971.2.S1_x_at--306--5931Chr01:7859498..7859522 (25 bp)
GAGCTTGATCCGAAGATCCCACAAA
LOC_Os01g14050
Os.23971.2.S1_x_at--487--2371Chr01:7859337..7859361 (25 bp)
AAACGCAGGTGAGCCAGGTAGATCA
LOC_Os01g14050
Os.23971.2.S1_x_at--44--8151Chr01:7859268..7859292 (25 bp)
GGACAAGCTGTCTGATATCCCAGAG
LOC_Os01g14050
Os.23971.2.S1_x_at--1083--4451Chr01:7859205..7859229 (25 bp)
GCCTGTTCCAGTTGAGGGTAAACCT
LOC_Os01g14050
Os.23971.2.S1_x_at--861--8871Chr01:7859178..7859202 (25 bp)
TGATGGTCATCCGACAACTGAAAAT
LOC_Os01g14050
Target Sequence 
GGCGAGCACGTAATCCTGACACGGAGATTTACAAAGAAGTTGACAAATCAAAGGATGCGCCTACCCCAAAAAGCAGTGGA
CAAGGGGGTTTTTTTGGCTCCTTTTTCCGGAAGAGCTTGAAGAAGGGAAGTTTCCATGATATTGATCCCGGTATTCCTAC
AACGCCAGGGCCTCAGAGTGCAACAGAGCTTGATCCGAAGATCCCACAAACTCCACGTCCAAACCTTAAGGAGGCCGGTG
AAAAACGGACATCGATAAAGATAGTAGTCGATGAAGATGCGAAACCGACAAGGAGTGCGGGAGATGCAGAGAACTTGACA
GAAGATGTAGCCAAGGTGATGGAGAAAAACGCAGGTGAGCCAGGTAGATCACTGACAAGCATACTGAGTAGAAAGATTTC
CAGGAAGAAACCAGAGGACAAGCTGTCTGATATCCCAGAGCAGACTGAAGCTCAAGCATCTGAGTTGGTGAAAGAAGGGC
CTGTTCCAGTTGAGGGTAAACCTATTGATGGTCATCCGACAACTGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23971.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis