Browse Element(s) Details


Os.36194.1.S1_at

Description gb:AK064212.1
DB_XREF= gi:32974230
TID=Os.36194.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinesin-related protein KLPA (B1066G12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F01, full insert sequence.
FL= gb:AK064212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1409011/11Kinesin-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed
LOC_Os01g14100Os.38014.1.S1_at11/111+7891763..7897352folate/biopterin transporter family protein, expressed
LOC_Os01g14110OsAffx.11044.1.S1_x_at8/111+7900615..7901557expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36194.1.S1_at--404--5851Chr01:7890414..7890438 (25 bp)
GACCATGTCACGTAGATCATCTCTA
LOC_Os01g14090
Os.36194.1.S1_at--587--8971Chr01:7891168..7891192 (25 bp)
TGAAACATTCTTCCAAGTCACCGGT
LOC_Os01g14090
Os.36194.1.S1_at--373--1171Chr01:7891183..7891207 (25 bp)
AGTCACCGGTGAACTTTAGCTCCTG
LOC_Os01g14090
Os.36194.1.S1_at--313--7151Chr01:7891221..7891245 (25 bp)
GTCTCATCTTCATAGGAAACCCCAT
LOC_Os01g14090
Os.36194.1.S1_at--757--8151Chr01:7891235..7891259 (25 bp)
GGAAACCCCATTTTTCAGACTTCAG
LOC_Os01g14090
Os.36194.1.S1_at--457--7611Chr01:7891264..7891288 (25 bp)
GGGCAACATCTAGGTTACATTCTTT
LOC_Os01g14090
Os.36194.1.S1_at--269--2491Chr01:7891349..7891373 (25 bp)
AACAGCGGCTATGTACTTGTCTTGC
LOC_Os01g14090
Os.36194.1.S1_at--601--3611Chr01:7891364..7891388 (25 bp)
CTTGTCTTGCGTTCTGATATGCTGC
LOC_Os01g14090
Os.36194.1.S1_at--611--9011Chr01:7891402..7891426 (25 bp)
TGCAATGCAAGTGATTCGGGCGGTT
LOC_Os01g14090
Os.36194.1.S1_at--209--7451Chr01:7891429..7891453 (25 bp)
GTGTACTTGTGTTGCATTCTGATAT
LOC_Os01g14090
Os.36194.1.S1_at--714--8991Chr01:7891475..7891499 (25 bp)
TGAATGCAAGTGATCCGGGCCTGGA
LOC_Os01g14090
Target Sequence 
GACCATGTCACGTAGATCATCTCTAGGAGGGAAGTCAGATATAGGTAGCGATAAAAGAGGTGCCAAGACACCACCCCCGG
TGAATTCAGCTGCAAAGGCGAAGAGATGGCTGTGAGTCTGAAGAGAAATACTAAGAAAGTTTCACTTCAAGCTGAGGGGG
TACAAGCCTTTGCCAAGGCTGAAACATTCTTCCAAGTCACCGGTGAACTTTAGCTCCTGTTTATGCTGAAAAGTCTCATC
TTCATAGGAAACCCCATTTTTCAGACTTCAGAGTAGGGCAACATCTAGGTTACATTCTTTGTAACGATTGGGACTTTTTA
GGAGGTTACAAAGATTGAACCTTGGAAGATGGGAAGGCGAAACAGCGGCTATGTACTTGTCTTGCGTTCTGATATGCTGC
AGACTTAACGAAATGCAATGCAAGTGATTCGGGCGGTTGTGTGTACTTGTGTTGCATTCTGATATGCTGTAAACTTCTTA
ACGAAATGAATGCAAGTGATCCGGGCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis