Browse Element(s) Details


Os.38100.1.S1_at

Description gb:AK061290.1
DB_XREF= gi:32971308
TID=Os.38100.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative formin-like protein AHF1 (P0674H09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A05, full insert sequence.
FL= gb:AK061290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6724011/11Formin Homology 2 Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g67229NANA1+39338346..39338807NA
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009960biological_processendosperm development
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0030041biological_processactin filament polymerization
GO:0045010biological_processactin nucleation
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0016020cellular_componentmembrane
GO:0003779molecular_functionactin binding
GO:0005515molecular_functionprotein binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38100.1.S1_at--754--1171Chr01:39341224..39341248 (25 bp)
AGTACTTCCATGGTGACTCTGCGAA
LOC_Os01g67240
Os.38100.1.S1_at--652--2771Chr01:39341200..39341224 (25 bp)
AAGAGGAAGCTCACCCTTTCAGGAT
LOC_Os01g67240
Os.38100.1.S1_at--399--4311Chr01:39341186..39341210 (25 bp)
CCTTTCAGGATCTTCATGGTGGTCA
LOC_Os01g67240
Os.38100.1.S1_at--92--7951Chr01:39341160..39341184 (25 bp)
GGATTTCCTCTCAGTTCTTGATCAA
LOC_Os01g67240
Os.38100.1.S1_at--798--10851Chr01:39341122..39341146 (25 bp)
TTGGCAGGATCAATGACCGCACGAT
LOC_Os01g67240
Os.38100.1.S1_at--4--3011Chr01:39341058..39341082 (25 bp)
AATGATGCCACAGTTGTTCCCCAGG
LOC_Os01g67240
Os.38100.1.S1_at--285--6711Chr01:39341043..39341067 (25 bp)
GTTCCCCAGGATTCATGCTTTGAGA
LOC_Os01g67240
Os.38100.1.S1_at--594--5571Chr01:39341000..39341024 (25 bp)
GAAAGTTCAGCCACTTCAGCATCAT
LOC_Os01g67240
Os.38100.1.S1_at--92--391Chr01:39340977..39341001 (25 bp)
ATCACCTTGATCACCAGTAGTCTGC
LOC_Os01g67240
Os.38100.1.S1_at--67--10271Chr01:39340870..39340894 (25 bp)
TTTGAACCTTTTGTACCTGTAGATT
LOC_Os01g67240
Os.38100.1.S1_at--1078--3171Chr01:39340693..39340717 (25 bp)
CAATTTCAAGTATGGCCAGTCTGCA
LOC_Os01g67240
Target Sequence 
AGTACTTCCATGGTGACTCTGCGAAAGAGGAAGCTCACCCTTTCAGGATCTTCATGGTGGTCAGGGATTTCCTCTCAGTT
CTTGATCAAGTCTGCAAGGAAGTTGGCAGGATCAATGACCGCACGATCGCTAGCTCGGTGCGCCATTTCCCAGTACCCGT
CAACCCAATGATGCCACAGTTGTTCCCCAGGATTCATGCTTTGAGAGCTGGAATCTCAGATGATGAAAGTTCAGCCACTT
CAGCATCATCACCTTGATCACCAGTAGTCTGCCAATAGAAATTTTTCGCAGAGTACTGTGGGAAACCTCCATAGGGCAGA
GGGAGACCAACGGCGACGGGGTGTCAAATTTTTTTTTGAACCTTTTGTACCTGTAGATTATAGAATGTAAGAAGTTTTTT
TGCAAATANTNATTTCTATATATAAGAGGAGATAAAATCTAGATCAGAGGAGGAAATAAGCAGTTCATGTGTTTGTCATC
TTCAGTCTGTACATGACACGAGGTAGTGAAACAGCCTGTACAATGTACTAACAATTTCAAGTATGGCCAGTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis