Browse Element(s) Details


Os.38154.1.A1_at

Description gb:AK061914.1
DB_XREF= gi:32971932
TID=Os.38154.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A11, full insert sequence.
FL= gb:AK061914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0515010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05110Os.3583.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05110OsAffx.4726.1.S1_at11/116+2255855..2260001Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g05120OsAffx.15270.1.S1_at9/116+2261968..2262878hypothetical protein
LOC_Os06g05120Os.46584.1.S1_x_at2/116+2261968..2262878hypothetical protein
LOC_Os06g05130Os.11639.1.S1_at11/116+2273699..2278508Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os06g05140OsAffx.4727.1.S1_at11/116+2281573..2283864pentatricopeptide, putative
LOC_Os06g05150Os.38154.1.A1_at10/116+2284929..2285795expressed protein
LOC_Os06g05150OsAffx.15271.1.S1_at6/116+2284929..2285795expressed protein
LOC_Os06g05160Os.27076.1.S1_at10/116+2291601..2297802sulfate transporter 3.4, putative, expressed
LOC_Os06g05169NANA6+2310288..2310656NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38154.1.A1_at--776--4411Chr06:2285230..2285254 (25 bp)
GCCAGAGATATTTGCTATCCCCAGT
LOC_Os06g05150
Os.38154.1.A1_at--626--6511Chr06:2285224..2285248 (25 bp)
GATATTTGCTATCCCCAGTGCTGCA
LOC_Os06g05150
Os.38154.1.A1_at--273--10151Chr06:2285215..2285239 (25 bp)
TATCCCCAGTGCTGCATTCCCAGGG
LOC_Os06g05150
Os.38154.1.A1_at--738--6871Chr06:2285080..2285104 (25 bp)
GTATCTTAGGTAGCATGTGCGCAAC
LOC_Os06g05150
Os.38154.1.A1_at--1159--7291Chr06:2285122..2285146 (25 bp)
GTGCGCAACAGAATGCATTTGTTGA
LOC_Os06g05150
Os.38154.1.A1_at--1128--171Chr06:2285106..2285130 (25 bp)
ATTTGTTGAAACTCAATTGGGCCAA
LOC_Os06g05150
Os.38154.1.A1_at--315--1511Chr06:2285039..2285063 (25 bp)
AGCAGGCAAACAGCTATGCAAATTG
LOC_Os06g05150
Os.38154.1.A1_at--958--6551Chr06:2284996..2285020 (25 bp)
GATTAATTTGGATAGCCAAGTTCTG
LOC_Os06g05150
Os.38154.1.A1_at--927--10131Chr06:2284964..2284988 (25 bp)
TATGCTGTTCGCGTTATATGATACT
LOC_Os06g05150
Os.38154.1.A1_at--1146--4731Chr06:2284961..2284985 (25 bp)
GCTGTTCGCGTTATATGATACTTTT
LOC_Os06g05150
Os.38154.1.A1_at--1039--3571Chr06:2284928..2284948 (21 bp)
CATATGCTATCCTTCGTTGCAAAAA
NONE
Target Sequence 
GCCAGAGATATTTGCTATCCCCAGTGCTGCATTCCCAGGGACNCTCAGAAGAAGGAANGAGCTTTCATTTGTTAAAATTC
GATTGGNCCNTTGTATCTTAGGTAGCATGTGCGCAACAGAATGCATTTGTTGAAACTCAATTGGGCCAATGTATNTTAGG
TAGCATGTGCGCAACNCAATNCAATNTGTTAAGCAGGCAAACAGCTATGCAAATTGNTAGTANTAGGATAAAGAGATTAA
TTTGGATAGCCAAGTTCTGTNCCTGGTATGCTGTTCGCGTTATATGATACTTTTNCCCGTGTTCTGNCATATGCTATCCT
TCGTTGCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38154.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis