Browse Element(s) Details


Os.38228.1.A1_s_at

Description gb:CB647662
DB_XREF= gi:29642655
DB_XREF=OSJNEb10K22.r
CLONE=OSJNEb10K22
TID=Os.38228.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.38228 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180823.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3263010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein
LOC_Os08g32650Os.28454.1.S1_at10/118+20086397..20088991cation efflux family protein, expressed
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38228.1.A1_s_at--647--7671Chr08:20085113..20085137 (25 bp)
GGGATTCAGTACTTCGGCCATTTCT
LOC_Os08g32630
Os.38228.1.A1_s_at--371--7931Chr08:20085114..20085138 (25 bp)
GGATTCAGTACTTCGGCCATTTCTC
LOC_Os08g32630
Os.38228.1.A1_s_at--933--6551Chr08:20085115..20085139 (25 bp)
GATTCAGTACTTCGGCCATTTCTCC
LOC_Os08g32630
Os.38228.1.A1_s_at--759--1091NONE
AGTACTTCGGCCATTTCTCCAGGAT
NONE
Os.38228.1.A1_s_at--648--9891Chr08:20085122..20085142 (21 bp)
TACTTCGGCCATTTCTCCAGGATGT
LOC_Os08g32630
Os.38228.1.A1_s_at--342--3651Chr08:20085124..20085239 (25 bp)
CTTCGGCCATTTCTCCAGGATGTAA
LOC_Os08g32630
Os.38228.1.A1_s_at--774--10611Chr08:20085125..20085240 (25 bp)
TTCGGCCATTTCTCCAGGATGTAAT
LOC_Os08g32630
Os.38228.1.A1_s_at--218--9451Chr08:20085126..20085241 (25 bp)
TCGGCCATTTCTCCAGGATGTAATA
LOC_Os08g32630
Os.38228.1.A1_s_at--771--8431Chr08:20085128..20085243 (25 bp)
GGCCATTTCTCCAGGATGTAATACA
LOC_Os08g32630
Os.38228.1.A1_s_at--996--151Chr08:20085132..20085247 (25 bp)
ATTTCTCCAGGATGTAATACAATTT
LOC_Os08g32630
Os.38228.1.A1_s_at--121--10591Chr08:20085134..20085249 (25 bp)
TTCTCCAGGATGTAATACAATTTGG
LOC_Os08g32630
Target Sequence 
GGGATTCAGTACTTCGGCCATTTCTCCAGGATGTAATACAATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38228.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis