Browse Element(s) Details


Os.38228.2.A1_x_at

Description gb:CB682296
DB_XREF= gi:29686021
DB_XREF=OSJNEf09H10.r
CLONE=OSJNEf09H10
TID=Os.38228.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.38228 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180823.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g326304/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein
LOC_Os08g32650Os.28454.1.S1_at10/118+20086397..20088991cation efflux family protein, expressed
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38228.2.A1_x_at--249--3751Chr08:20085306..20085330 (25 bp)
CCATTTTTAAGCAGGTAGACTCTTA
LOC_Os08g32630
Os.38228.2.A1_x_at--896--7811NONE
GGTAGACTCTTAAAAAACACTCAAG
NONE
Os.38228.2.A1_x_at--390--3311NONE
CACTCAAGTTATTTTTCTAACTTTG
NONE
Os.38228.2.A1_x_at--760--9511Chr08:20085351..20085375 (25 bp)
TCTAACTTTGATTTTCAGAAACTTC
LOC_Os08g32630
Os.38228.2.A1_x_at--466--2511Chr08:20085370..20085394 (25 bp)
AACTTCAGATAAGCTATGCTGGTCA
LOC_Os08g32630
Os.38228.2.A1_x_at--727--4871Chr08:20085382..20085406 (25 bp)
GCTATGCTGGTCAATGGATTTTATC
LOC_Os08g32630
Os.38228.2.A1_x_at--213--10571NONE
TTCTTCTTGCATTAGGCTGGACCTG
NONE
Os.38228.2.A1_x_at--795--10411NONE
TTATTAGGTCAAATCCCTGTGCCGT
NONE
Os.38228.2.A1_x_at--832--10071NONE
TAGGTCAAATCCCTGTGCCGTGTAG
NONE
Os.38228.2.A1_x_at--256--9711NONE
TCAAATCCCTGTGCCGTGTAGATAC
NONE
Os.38228.2.A1_x_at--1058--531NONE
ATCCCTGTGCCGTGTAGATACAAAG
NONE
Target Sequence 
CCATTTTTAAGCAGGTAGACTCTTAAAAAACACTCAAGTTATTTTTCTAACTTTGATTTTCAGAAACTTCAGATAAGCTA
TGCTGGTCAATGGATTTTATCTCCATTTCTTCTTGCATTAGGCTGGACCTGGAGTCATTTTTAACTGGTCAGGCCATTTT
GTGATGCTTGGTTATTATACATTCCTTTCCCCCTTTATAGCCCCAATCCTCAGGCCCTGGGTAGAATCCTTGCCATTGAG
GAACAAATATCAATGGAAACGATATTTCGCAGCATGGAAGTATGGAGCTGGCTTAGATTATCCCCAAGGGGAATAATCAG
CTTCTTTTGGAATTAGTTTATATTTCATTGAGAAAGAAATACATTCCGATAAAGGAACATATATCCCTTTTTTATTAGGT
CAAATCCCTGTGCCGTGTAGATACAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38228.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis