Browse Element(s) Details


Os.38301.2.A1_at

Description gb:CB677309
DB_XREF= gi:29681034
DB_XREF=OSJNEe14B20.r
CLONE=OSJNEe14B20
TID=Os.38301.2
CNT=9
FEA=EST
TIER=Stack
STK=7
UG=Os.38301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154C12, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1126011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11210OsAffx.26826.1.S1_at11/115+6312419..6313220expressed protein
LOC_Os05g11220NANA5+6318766..6318978hypothetical protein
LOC_Os05g11230OsAffx.26827.1.S1_at10/115+6321674..6322549hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_x_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11240OsAffx.26828.1.S1_at11/115+6324232..6325670hypothetical protein
LOC_Os05g11250Os.56031.1.S1_at11/115+6328307..6329255expressed protein
LOC_Os05g11260Os.38301.2.A1_at11/115+6337424..6341719expressed protein
LOC_Os05g11260OsAffx.14635.1.S1_x_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_s_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.38301.1.S1_a_at11/115+6337424..6341719expressed protein
LOC_Os05g11260Os.27133.2.S1_at5/115+6337424..6341719expressed protein
LOC_Os05g11270OsAffx.20490.1.S1_at1/115+6345492..6346607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11280NANA5+6347217..6348704transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11290OsAffx.30226.2.S1_x_at2/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.442.1.S1_x_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11290OsAffx.30226.2.S1_s_at1/115+6351178..6352532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11300OsAffx.26829.1.S1_at11/115+6359459..6360295hypothetical protein
LOC_Os05g11310OsAffx.26830.1.S1_at11/115+6362694..6364845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38301.2.A1_at--759--3011Chr05:6339145..6339169 (25 bp)
AATGCTCAGAGCCATGTTAGACTAG
LOC_Os05g11260
Os.38301.2.A1_at--316--631Chr05:6339144..6339168 (25 bp)
ATGCTCAGAGCCATGTTAGACTAGG
LOC_Os05g11260
Os.38301.2.A1_at--472--4831Chr05:6339142..6339166 (25 bp)
GCTCAGAGCCATGTTAGACTAGGCC
LOC_Os05g11260
Os.38301.2.A1_at--1150--3411Chr05:6339139..6339163 (25 bp)
CAGAGCCATGTTAGACTAGGCCAAA
LOC_Os05g11260
Os.38301.2.A1_at--999--4371Chr05:6339135..6339159 (25 bp)
GCCATGTTAGACTAGGCCAAAACCA
LOC_Os05g11260
Os.38301.2.A1_at--1135--131Chr05:6339133..6339157 (25 bp)
CATGTTAGACTAGGCCAAAACCAAC
LOC_Os05g11260
Os.38301.2.A1_at--505--2431Chr05:6339117..6339141 (25 bp)
AAAACCAACCAACTGCTGCTCCTAA
LOC_Os05g11260
Os.38301.2.A1_at--830--3231Chr05:6339116..6339136 (21 bp)
CAACCAACTGCTGCTCCTAAGAAAA
LOC_Os05g11260
Os.38301.2.A1_at--45--1712Chr06:24283955..24284191 (25 bp)
ACCAACTGCTGCTCCTAAGAAAAGA
NONE
Os.38301.2.A1_at--51--3271Chr05:6338965..6339132 (25 bp)
CAACTGCTGCTCCTAAGAAAAGACA
LOC_Os05g11260
Os.38301.2.A1_at--364--4771Chr05:6338960..6339127 (25 bp)
GCTGCTCCTAAGAAAAGACAGTGCA
LOC_Os05g11260
Target Sequence 
AATGCTCAGAGCCATGTTAGACTAGGCCAAAACCAACCAACTGCTGCTCCTAAGAAAAGACAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38301.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis