Browse Element(s) Details


Os.38400.1.S1_at

Description gb:AK121418.1
DB_XREF= gi:37991041
TID=Os.38400.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133H05, full insert sequence.
FL= gb:AK121418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2983011/11BHLH transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29810Os.45957.4.S1_x_at8/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29810Os.39411.1.A1_at4/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29820Os.49201.1.S1_at11/119+18121626..18122462bZIP transcription factor family protein, expressed
LOC_Os09g29830Os.38400.1.S1_at11/119+18140490..18143512BHLH transcription factor, putative, expressed
LOC_Os09g29840Os.21292.1.S1_at11/119+18149617..18154454Hsp90 protein, expressed
LOC_Os09g29850OsAffx.30088.2.S1_at10/119+18155178..18157500expressed protein
LOC_Os09g29860NANA9+18158819..18159112hypothetical protein
LOC_Os09g29870OsAffx.6445.1.S1_at11/119+18162203..18163292hypothetical protein
LOC_Os09g29880OsAffx.30089.1.S1_at10/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.38764.1.S1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.48015.1.A1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.23189.1.S1_at1/119+18166830..18169831hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38400.1.S1_at--1143--9431Chr09:18142934..18142958 (25 bp)
TCGGTTCTCAGGACCTAAGCATCAG
LOC_Os09g29830
Os.38400.1.S1_at--580--7551Chr09:18143022..18143046 (25 bp)
GGGCCAATTCCATGTACGTGCAATT
LOC_Os09g29830
Os.38400.1.S1_at--628--5191Chr09:18143041..18143065 (25 bp)
GCAATTGCTTCTGGCATCTGGTGAA
LOC_Os09g29830
Os.38400.1.S1_at--732--931Chr09:18143073..18143097 (25 bp)
AGGCACACGCACATGACTGAAGCTT
LOC_Os09g29830
Os.38400.1.S1_at--947--5391Chr09:18143091..18143115 (25 bp)
GAAGCTTGCTACTACTGCTGGAGAA
LOC_Os09g29830
Os.38400.1.S1_at--943--3831Chr09:18143131..18143155 (25 bp)
CTGCTAGCTCATCGCGTAACTGAAG
LOC_Os09g29830
Os.38400.1.S1_at--997--3151Chr09:18143170..18143194 (25 bp)
AATTCCTTCCGTGGCTAGCTGTATA
LOC_Os09g29830
Os.38400.1.S1_at--406--2271Chr09:18143273..18143297 (25 bp)
AAATCTGCGTCCTTGATGGCTGGAA
LOC_Os09g29830
Os.38400.1.S1_at--809--7631Chr09:18143308..18143332 (25 bp)
GGGAGCGTGCATTTACACTGCAGCA
LOC_Os09g29830
Os.38400.1.S1_at--242--5231Chr09:18143356..18143380 (25 bp)
GAATTTGCTGCAGGGCTGGCACAAT
LOC_Os09g29830
Os.38400.1.S1_at--765--2791Chr09:18143383..18143407 (25 bp)
AAGATCACTCATCCGGTGGCTTTGT
LOC_Os09g29830
Target Sequence 
TCGGTTCTCAGGACCTAAGCATCAGGCCATCTCAGGATGGGTTTCAAATGTGAAGAAGACGAAGAAGAAGAAGATGATGA
TGATGAGGGGGCCAATTCCATGTACGTGCAATTGCTTCTGGCATCTGGTGAACAAGGGCAGGCACACGCACATGACTGAA
GCTTGCTACTACTGCTGGAGAAGCAGCGTTTGCAGTGCTGCTAGCTCATCGCGTAACTGAAGTCTGAAGGGCTTTTAATT
CCTTCCGTGGCTAGCTGTATATCCATCGAGGTTTTATTGTGTTCAGAACTGAAACTGAAAGGCTTTTGAGCCCCNACGTA
CAGGGACGCTGGAAACGAAAAATCTGCGTCCTTGATGGCTGGAAATTCTGTCTGGGGAGCGTGCATTTACACTGCAGCAC
GAGGAGCAGCAGGCAGGCAGCTGAATTTGCTGCAGGGCTGGCACAATGCAAGATCACTCATCCGGTGGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis