Browse Element(s) Details


Os.38604.1.S1_x_at

Description gb:BM421337
DB_XREF= gi:18388139
DB_XREF=V005G09
CLONE=V005G09
TID=Os.38604.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38604 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_171974.1 (A.thaliana) tubulin alpha-2alpha-4 chain (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1422010/11Tubulin alpha-3 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14180Os.8096.1.S1_at11/1111+7927086..7931151expressed protein
LOC_Os11g14190Os.26629.1.S1_a_at11/1111+7933880..7935117expressed protein
LOC_Os11g14200NANA11+7941223..7942285hypothetical protein
LOC_Os11g14210NANA11+7954606..7954926hypothetical protein
LOC_Os11g14220Os.21762.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_s_at11/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.38604.1.S1_x_at10/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14220Os.21762.2.S1_x_at8/1111+7955980..7958838Tubulin alpha-3 chain, putative, expressed
LOC_Os11g14230Os.17242.1.S1_at11/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14230Os.51919.1.S1_at1/1111+7959903..7964507hemolysin A family protein, expressed
LOC_Os11g14240Os.57063.1.S1_at11/1111+7966149..7968131expressed protein
LOC_Os11g14250NANA11+7974089..7974517hypothetical protein
LOC_Os11g14260NANA11+7980481..7983082receptor-interacting serine-threonine kinase 4, putative

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0045298cellular_componenttubulin
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38604.1.S1_x_at--1127--9431Chr11:7958473..7958497 (25 bp)
TCGGCTCCGAGTTCGACGATGGTGA
LOC_Os11g14220
Os.38604.1.S1_x_at--686--3711Chr11:7958522..7958546 (25 bp)
CTAGAGAGGTTCAGGGTTCTTGCCT
LOC_Os11g14220
Os.38604.1.S1_x_at--1038--7671Chr11:7958535..7958559 (25 bp)
GGGTTCTTGCCTGGTGCCTTGGCAA
LOC_Os11g14220
Os.38604.1.S1_x_at--30--9191Chr11:7958542..7958566 (25 bp)
TGCCTGGTGCCTTGGCAATGCTTGA
LOC_Os11g14220
Os.38604.1.S1_x_at--362--7791Chr11:7958547..7958571 (25 bp)
GGTGCCTTGGCAATGCTTGATTACT
LOC_Os11g14220
Os.38604.1.S1_x_at--150--4451Chr11:7958550..7958574 (25 bp)
GCCTTGGCAATGCTTGATTACTGCT
LOC_Os11g14220
Os.38604.1.S1_x_at--209--9251Chr11:7958579..7958619 (25 bp)
TCCTATGATCTGTCTATCAGTTTGT
LOC_Os11g14220
Os.38604.1.S1_x_at--1133--4291Chr11:7958580..7958620 (25 bp)
CCTATGATCTGTCTATCAGTTTGTG
LOC_Os11g14220
Os.38604.1.S1_x_at--1041--3691Chr11:7958581..7958621 (25 bp)
CTATGATCTGTCTATCAGTTTGTGT
LOC_Os11g14220
Os.38604.1.S1_x_at--522--6411Chr11:7958585..7958625 (25 bp)
GATCTGTCTATCAGTTTGTGTGTCT
LOC_Os11g14220
Os.38604.1.S1_x_at--241--3891NONE
CTGTCTATCAGTTTGTGTGTCTGGT
NONE
Target Sequence 
TCGGCTCCGAGTTCGACGATGGTGACGAGGGTGATGAGGGTGACGAGTACTAGAGAGGTTCAGGGTTCTTGCCTGGTGCC
TTGGCAATGCTTGATTACTGCTGCTATCCTATGATCTGTCTATCAGTTTGTGTGTCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38604.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis