Browse Element(s) Details


Os.38669.1.A1_s_at

Description gb:BI305229
DB_XREF= gi:14980551
DB_XREF=NRS2R_1_C21
CLONE=NRS2R_1_C21
TID=Os.38669.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.38669 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200208.1 (A.thaliana) tyrosine aminotransferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4251011/11tyrosine/nicotianamine aminotransferases family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42470NANA11+25080955..25081414hypothetical protein
LOC_Os11g42480OsAffx.31441.1.S1_x_at11/1111+25082609..25084015Transferase family protein, expressed
LOC_Os11g42490Os.27592.2.S1_at11/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42490Os.27592.1.A1_at10/1111+25088535..25090369retrotransposon protein, putative, unclassified, expressed
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed
LOC_Os11g42570OsAffx.31443.1.S1_at11/1111+25119412..25120366hypothetical protein
LOC_Os11g42580OsAffx.19340.1.S1_at11/1111+25125503..25129837NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0009058biological_processbiosynthesis
GO:0009611biological_processresponse to wounding
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0004838molecular_functiontyrosine transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38669.1.A1_s_at--1086--4731Chr11:25095949..25095973 (25 bp)
GCTGATGCTCTCTACAGAAGAGTGA
LOC_Os11g42510
Os.38669.1.A1_s_at--982--8311Chr11:25095889..25095910 (22 bp)
GGCTCCATGTTCATGATGGTTGAAG
LOC_Os11g42510
Os.38669.1.A1_s_at--1019--2111Chr11:25095745..25095769 (25 bp)
ACATGGACTTCGCTCGTGAATTGAT
LOC_Os11g42510
Os.38669.1.A1_s_at--53--8131Chr11:25095741..25095765 (25 bp)
GGACTTCGCTCGTGAATTGATTAAA
LOC_Os11g42510
Os.38669.1.A1_s_at--879--9751Chr11:25095720..25095744 (25 bp)
TAAAGAAGAATCTGTCCTAGTTTTA
LOC_Os11g42510
Os.38669.1.A1_s_at--168--4291Chr11:25095376..25095400 (25 bp)
CCTACTAGTGTGATACTTGAAGCCT
LOC_Os11g42510
Os.38669.1.A1_s_at--189--1111Chr11:25095370..25095394 (25 bp)
AGTGTGATACTTGAAGCCTGTGATA
LOC_Os11g42510
Os.38669.1.A1_s_at--928--5411Chr11:25095358..25095382 (25 bp)
GAAGCCTGTGATAGGATTGAAGCAT
LOC_Os11g42510
Os.38669.1.A1_s_at--453--11Chr11:25095330..25095354 (25 bp)
GCCAAAAAAGAGCAGTTCAAGTAAA
LOC_Os11g42510
Os.38669.1.A1_s_at--283--3131Chr11:25095157..25095181 (25 bp)
AATTAGCGCAGATGCTTGCCTGTAC
LOC_Os11g42510
Os.38669.1.A1_s_at--705--1651Chr11:25095153..25095177 (25 bp)
AGCGCAGATGCTTGCCTGTACTGTA
LOC_Os11g42510
Target Sequence 
GCTGATGCTCTCTACAGAAGAGTGAACCAGATTGAAGNTTTGCAGTGNTACTCAAAACCTCANGGCTCCATGTTCATGAT
GGTTGAAGTCAACCCTTCACTTNTGTTCGGTGTTGAAGANNACATGGACTTCGCTCGTGAATTGATTAAAGAAGAATCTG
TCCTAGTTTTACCNGGTTCNGTAATTGGGTTAAANAACTGGATTAGGATATTTTTTGGGGCCCCTACTAGTGTGATACTT
GAAGCCTGTGATAGGATTGAAGCATTTTGCCAAAAAAGAGCAGTTCAAGTAAAGCTNCTGAAAAANAAGTTTTGAAGCCA
ACAAATAAGATTTTTTTTTTTTGGCCGGCTCATAATAACATGTATANAGCCTTTTATGTCAATTTTANAGGATTTTCTTT
TATCTTTTTGNCNCACGCGATTTGAGAATTGTATGTAGAATAATTAGCGCAGATGCTTGCCTGTACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38669.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis