Browse Element(s) Details


Os.38760.1.S1_s_at

Description gb:CB645980
DB_XREF= gi:29640973
DB_XREF=OSJNEb08B15.r
CLONE=OSJNEb08B15
TID=Os.38760.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.38760 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177233.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2809011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28060NANA5+16320252..16320609hypothetical protein
LOC_Os05g28070NANA5+16331681..16334680retrotransposon protein, putative, unclassified
LOC_Os05g28080NANA5+16337505..16339218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28090Os.38760.1.S1_s_at11/115+16343312..16345070expressed protein
LOC_Os05g28090Os.38760.1.S1_at11/115+16343312..16345070expressed protein
LOC_Os05g28090Os.47712.1.S1_at10/115+16343312..16345070expressed protein
LOC_Os05g28100OsAffx.27865.1.S1_x_at1/115+16348734..16350647transposon protein, putative, Pong sub-class, expressed
LOC_Os05g28110Os.46500.2.S1_at2/115+16350767..16360901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28110Os.46500.1.S1_at1/115+16350767..16360901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28120Os.50584.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.14919.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.56216.1.S1_at2/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120OsAffx.29313.1.S1_at1/115+16365395..16375688transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38760.1.S1_s_at--803--7991Chr05:16343745..16343769 (25 bp)
GGATGATGTTGTGGGCACCATTCGT
LOC_Os05g28090
Os.38760.1.S1_s_at--519--8671Chr05:16343736..16343760 (25 bp)
TGTGGGCACCATTCGTCAACTTCAG
LOC_Os05g28090
Os.38760.1.S1_s_at--80--3271Chr05:16343720..16343744 (25 bp)
CAACTTCAGGAAGTTCCCAAGGGAT
LOC_Os05g28090
Os.38760.1.S1_s_at--915--7651Chr05:16343700..16343724 (25 bp)
GGGATCCAACCATGAAGTACCCTTG
LOC_Os05g28090
Os.38760.1.S1_s_at--369--5311Chr05:16343687..16343711 (25 bp)
GAAGTACCCTTGGTCCAAGCCAAAG
LOC_Os05g28090
Os.38760.1.S1_s_at--324--7872Chr09:14590719..14590743 (25 bp)
GGATTTGTAAAACATGCATGGTGCC
NONE
Os.38760.1.S1_s_at--243--8871Chr05:16343468..16343492 (25 bp)
TGATGCAATATTACACTAGCCCAGG
LOC_Os05g28090
Os.38760.1.S1_s_at--126--7752Chr09:14590560..14590579 (20 bp)
GGTGTTGGCAAAATCTAGTACTGGA
NONE
Os.38760.1.S1_s_at--1000--1171Chr05:16343379..16343403 (25 bp)
AGTACTGGAGTAGCAGCCTGTCTTT
LOC_Os05g28090
Os.38760.1.S1_s_at--1018--1672Chr09:14590524..14590548 (25 bp)
AGCCTGTCTTTCTGTTTCACAGTTA
NONE
Os.38760.1.S1_s_at--997--8772Chr09:14590512..14590536 (25 bp)
TGTTTCACAGTTAAGGCACCGTTTT
NONE
Target Sequence 
GGATGATGTTGTGGGCACCATTCGTCAACTTCAGGAAGTTCCCAAGGGATCCAACCATGAAGTACCCTTGGTCCAAGCCA
AAGGAAGGCACNCCGTTGTTCAAGGACAGATACCCNCCTATAGAAACCTACAAGTGATCAGAAGTACTAGNCCGTATTNT
TTTCGAAAAAAAANTAGCATTTNTTTGCATGGATTTGTAAAACATGCATGGTGCCNCAATNTTNTTGGATGTATCGAGAG
CAAAGTGAGATNTCNCATAAAAGAAAGGGAAATGATAATGATGCAATATTACACTAGCCCAGGCNCCGAAGCATATGTTG
TGCTTGGGAAAAGGTTGCTAGATAAGTTGCAGGTGTTGGCAAAATCTAGTACTGGAGTAGCAGCCTGTCTTTCTGTTTCA
CAGTTAAGGCACCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38760.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis