Browse Element(s) Details


Os.50584.1.S1_at

Description gb:AK121944.1
DB_XREF= gi:37991567
TID=Os.50584.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107F05, full insert sequence.
FL= gb:AK121944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g281204/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28090Os.38760.1.S1_s_at11/115+16343312..16345070expressed protein
LOC_Os05g28090Os.38760.1.S1_at11/115+16343312..16345070expressed protein
LOC_Os05g28090Os.47712.1.S1_at10/115+16343312..16345070expressed protein
LOC_Os05g28100OsAffx.27865.1.S1_x_at1/115+16348734..16350647transposon protein, putative, Pong sub-class, expressed
LOC_Os05g28110Os.46500.2.S1_at2/115+16350767..16360901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28110Os.46500.1.S1_at1/115+16350767..16360901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28120Os.50584.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.14919.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.56216.1.S1_at2/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120OsAffx.29313.1.S1_at1/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28129OsAffx.27053.1.S1_at11/115+16376790..16378007hypothetical protein
LOC_Os05g28140OsAffx.27054.1.S1_at11/115+16383253..16383921hypothetical protein
LOC_Os05g28150NANA5+16388498..16388778hypothetical protein
LOC_Os05g28170Os.50328.1.S1_at11/115+16389895..16394689expressed protein
LOC_Os05g28170Os.50328.2.S1_x_at11/115+16389895..16394689expressed protein
LOC_Os05g28180Os.9020.1.S1_at11/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28180OsAffx.14859.1.S1_x_at10/115+16399487..16407399AMP deaminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50584.1.S1_at--924--7952Chr05:16085859..16085883 (25 bp)
GGATCAGCACTAGAGCAGATACTTG
NONE
Os.50584.1.S1_at--693--4392Chr05:16085914..16085938 (25 bp)
GCCACTATTCCTCCATCGAAATGAA
NONE
Os.50584.1.S1_at--53--5272Chr05:16085975..16085999 (25 bp)
GAATCCACCTTGCTTTTCTAGTTTT
NONE
Os.50584.1.S1_at--290--10571Chr05:16085998..16086022 (25 bp)
TTCTTTTTTGCTGTCATAGCTGGAG
NONE
Os.50584.1.S1_at--753--8851Chr05:16086033..16086057 (25 bp)
TGATGCGCCAGTGGAAGTAACCCAT
NONE
Os.50584.1.S1_at--536--10712Chr05:16086083..16086107 (25 bp)
TTGCTAATTCTTCTGGTTCCATTGT
NONE
Os.50584.1.S1_at--239--5351Chr05:16086484..16086508 (25 bp)
GAAGTTGTCACCGTTTGTTTCCAAT
NONE
Os.50584.1.S1_at--517--10251Chr05:16086501..16086525 (25 bp)
TTTCCAATAAACTGTCCCTACTTCA
NONE
Os.50584.1.S1_at--357--5031Chr05:16086531..16086555 (25 bp)
GCAGTCATGCTACCTATCTTGTTTA
NONE
Os.50584.1.S1_at--174--9871Chr05:16086564..16086588 (25 bp)
TACAGAGGCAGGCAAGCTGGCAATT
NONE
Os.50584.1.S1_at--17--8231Chr05:16086582..16086606 (25 bp)
GGCAATTTATAGTACCAGTCCATGA
NONE
Target Sequence 
GGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAAATGAA
GGTAAGCATGGGTTGCATAGATTATGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTGTCATAGCT
GGAGATGAACAAGGTGATGCGCCAGTGGAAGTAACCCATGGAGATGAACAAGGAGAGGGAGGAATTGCTAATTCTTCTGG
TTCCATTGTTCTTGAACACGAAGGTGCAACTGATCAAGATGAGGCTAGAGGTATTGTCTGATTGCTACAGTGGTTACAGA
TTTTGTGCAGAAGTTAAGCTGAAACTCTAGTTCAAAATGAGTACTGCAGTATTGTTAGTTCAAGTTCTCAACTTTTGGAG
TTATGGATATATTAGTATAATTTGGTTTTTCTCTATTTGATTTTACTGTTCTAGGAAGTTGTCACCGTTTGTTTCCAATA
AACTGTCCCTACTTCAGAGTAGCAGTCATGCTACCTATCTTGTTTATCTTGGTTTACAGAGGCAGGCAAGCTGGCAATTT
ATAGTACCAGTCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis