Browse Element(s) Details


Os.50328.1.S1_at

Description gb:AK120753.1
DB_XREF= gi:37990376
TID=Os.50328.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006K02, full insert sequence.
FL= gb:AK120753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2817011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28120Os.50584.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.14919.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.56216.1.S1_at2/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120OsAffx.29313.1.S1_at1/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28129OsAffx.27053.1.S1_at11/115+16376790..16378007hypothetical protein
LOC_Os05g28140OsAffx.27054.1.S1_at11/115+16383253..16383921hypothetical protein
LOC_Os05g28150NANA5+16388498..16388778hypothetical protein
LOC_Os05g28170Os.50328.1.S1_at11/115+16389895..16394689expressed protein
LOC_Os05g28170Os.50328.2.S1_x_at11/115+16389895..16394689expressed protein
LOC_Os05g28180Os.9020.1.S1_at11/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28180OsAffx.14859.1.S1_x_at10/115+16399487..16407399AMP deaminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50328.1.S1_at--216--3751Chr05:16390465..16390489 (25 bp)
CTCAATCTTGTCCAGGTAGTCCAGA
LOC_Os05g28170
Os.50328.1.S1_at--1064--9191Chr05:16390446..16390470 (25 bp)
TCCAGAGTGTCTTTATTGGCTGCCA
LOC_Os05g28170
Os.50328.1.S1_at--456--6691Chr05:16390393..16390417 (25 bp)
GTTCCAGAATCTTGCATTGGCTCGC
LOC_Os05g28170
Os.50328.1.S1_at--989--7651Chr05:16390341..16390365 (25 bp)
GGGATCGCTGTCATTGTTCTAGTTC
LOC_Os05g28170
Os.50328.1.S1_at--902--9211Chr05:16390310..16390334 (25 bp)
TCCAGCTAGCTTCGGCCATAGAGAT
LOC_Os05g28170
Os.50328.1.S1_at--334--7031Chr05:16390271..16390295 (25 bp)
GTAACCAATAGTTCTCCAGACGGAA
LOC_Os05g28170
Os.50328.1.S1_at--1149--1451Chr05:16390192..16390216 (25 bp)
AGAAGTTGTAGCCACCAATGCCCTA
LOC_Os05g28170
Os.50328.1.S1_at--444--3031Chr05:16390176..16390200 (25 bp)
AATGCCCTAGCTGATGTGGCTGTGA
LOC_Os05g28170
Os.50328.1.S1_at--422--2351Chr05:16390152..16390176 (25 bp)
AAAGCTTGAGCCCAGTTGGTATCAA
LOC_Os05g28170
Os.50328.1.S1_at--486--8131Chr05:16390098..16390122 (25 bp)
GGACATCTTTTATTGGACCAGGTGA
LOC_Os05g28170
Os.50328.1.S1_at--552--1191Chr05:16390026..16390050 (25 bp)
AGTAGTTGAAATCCTCCATTCCTCT
LOC_Os05g28170
Target Sequence 
CTCAATCTTGTCCAGGTAGTCCAGAGTGTCTTTATTGGCTGCCAGAAGCGTTGGAAGGTTTCGTTTATTTCTGTTCCAGA
ATCTTGCATTGGCTCGCAGGCGTCTGAGTTTGTGGTTGAAACGGGGGATCGCTGTCATTGTTCTAGTTCCTCTGCTCCAG
CTAGCTTCGGCCATAGAGATGAAGTCTGGTGTTTGTAACCAATAGTTCTCCAGACGGAATATATCTGATTTTGTCCAGTT
ATCTGAGAACTCTGCTAGGATCGGTATGTGGTCAGAAGTTGTAGCCACCAATGCCCTAGCTGATGTGGCTGTGAAAGCTT
GAGCCCAGTTGGTATCAATGAGCACTCTATCTAATTTTACCAAAGTAGGACATCTTTTATTGGACCAGGTGAACTTTCTA
TTTGGAATGTCAATGTCTAATAACCCAACTTCATTTACCAGTAGTTGAAATCCTCCATTCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis