Browse Element(s) Details


Os.9020.1.S1_at

Description gb:AK058281.1
DB_XREF= gi:32968299
TID=Os.9020.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D05, full insert sequence.
FL= gb:AK058281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2818011/11AMP deaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28120Os.50584.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.14919.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.56216.1.S1_at2/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120OsAffx.29313.1.S1_at1/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28129OsAffx.27053.1.S1_at11/115+16376790..16378007hypothetical protein
LOC_Os05g28140OsAffx.27054.1.S1_at11/115+16383253..16383921hypothetical protein
LOC_Os05g28150NANA5+16388498..16388778hypothetical protein
LOC_Os05g28170Os.50328.1.S1_at11/115+16389895..16394689expressed protein
LOC_Os05g28170Os.50328.2.S1_x_at11/115+16389895..16394689expressed protein
LOC_Os05g28180Os.9020.1.S1_at11/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28180OsAffx.14859.1.S1_x_at10/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28190Os.4776.1.S1_at11/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28190Os.18091.1.S1_at1/115+16424800..16428468RanBP1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009168biological_processpurine ribonucleoside monophosphate biosynthesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003876molecular_functionAMP deaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9020.1.S1_at--895--7871Chr05:16400454..16400476 (23 bp)
GGTTTTCACATGCTCTCAAGGCACA
LOC_Os05g28180
Os.9020.1.S1_at--1158--8871Chr05:16400041..16400065 (25 bp)
TGAGATGCGTCTTGTATACCTAAAC
LOC_Os05g28180
Os.9020.1.S1_at--673--2971Chr05:16400016..16400040 (25 bp)
AATGTCATCTTACCTGACGAGGTGG
LOC_Os05g28180
Os.9020.1.S1_at--644--9971Chr05:16399979..16400003 (25 bp)
TACCTGGTGTATATGGCGCGGTTGC
LOC_Os05g28180
Os.9020.1.S1_at--221--4571Chr05:16399964..16399988 (25 bp)
GCGCGGTTGCCATGGGAGTTACATT
LOC_Os05g28180
Os.9020.1.S1_at--219--8231Chr05:16399604..16399628 (25 bp)
GGCAAACAATTGCTTCGGCGTGATT
LOC_Os05g28180
Os.9020.1.S1_at--1028--4651Chr05:16399587..16399611 (25 bp)
GCGTGATTGTAATTGTGCAGCCTCT
LOC_Os05g28180
Os.9020.1.S1_at--76--7351Chr05:16399573..16399597 (25 bp)
GTGCAGCCTCTCGTTTGTGAAGGAT
LOC_Os05g28180
Os.9020.1.S1_at--582--7351Chr05:16399557..16399581 (25 bp)
GTGAAGGATGCTATACCAACATTGC
LOC_Os05g28180
Os.9020.1.S1_at--311--10731Chr05:16399536..16399560 (25 bp)
TTGCATGTACTTTAACTGGTCTTAC
LOC_Os05g28180
Os.9020.1.S1_at--803--3891Chr05:16399521..16399545 (25 bp)
CTGGTCTTACACAGTTATACTCCTG
LOC_Os05g28180
Target Sequence 
GGTTTTCACATGCTCTCAAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAA
ACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGATTTGGAGAGATGAGATGCGTCTTGTATACCTAAACAATGT
CATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTT
GGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAAC
CAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTAGATTAGGAAGG
ATGAAGCGGCTCAGCTGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGCTTCGGCGTGATTGTA
ATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis