Browse Element(s) Details


Os.38770.1.S1_at

Description gb:CB684074
DB_XREF= gi:29687799
DB_XREF=OSJNEf13E01.r
CLONE=OSJNEf13E01
TID=Os.38770.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.38770 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2699011/11Phospholipid-transporting ATPase 2, putative
LOC_Os11g110603/11GHMP kinases putative ATP-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed
LOC_Os05g26970NANA5+15588392..15593533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26980OsAffx.14842.1.S1_at11/115+15601304..15601642hypothetical protein
LOC_Os05g26990Os.38770.1.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.3.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.1.S1_x_at10/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.46330.1.S1_at7/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g27000NANA5+15620769..15622793hypothetical protein
LOC_Os05g27010Os.17273.1.S1_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27010OsAffx.14844.1.S1_s_at11/115+15630952..15632647POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004335molecular_functiongalactokinase activity
GO:0005524molecular_functionATP binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38770.1.S1_at--329--6891Chr05:15607989..15608013 (25 bp)
GTATCATCTCCCAGATTAGAGCTGA
LOC_Os05g26990
Os.38770.1.S1_at--302--5512Chr11:6106274..6106298 (25 bp)
GAACAAGAGCCCAAGAAAAACCTAT
LOC_Os11g11060
Os.38770.1.S1_at--559--2631Chr05:15607948..15607972 (25 bp)
AACCTATATGACATCCTTTGGAGCA
LOC_Os05g26990
Os.38770.1.S1_at--727--8051Chr05:15607929..15607953 (25 bp)
GGAGCACAGGACTTTTTTCCCTGAT
LOC_Os05g26990
Os.38770.1.S1_at--90--2252Chr11:6106362..6106816 (25 bp)
AAATTCCTGTGTTCCAAAGGACACT
LOC_Os11g11060
Os.38770.1.S1_at--1001--6671Chr05:15607866..15607890 (25 bp)
GTTCCAAAGGACACTGCACATTTTT
LOC_Os05g26990
Os.38770.1.S1_at--726--2511Chr05:15607838..15607862 (25 bp)
AACATTGCCTGTAAGGCCACATGCA
LOC_Os05g26990
Os.38770.1.S1_at--199--8452Chr11:6106413..6106696 (25 bp)
GGCCACATGCAATTCCTTACAAATA
LOC_Os11g11060
Os.38770.1.S1_at--730--6611Chr05:15607798..15607822 (25 bp)
GTTGGAATGCCAAAACCCGAGTTAT
LOC_Os05g26990
Os.38770.1.S1_at--772--6791Chr05:15607778..15607802 (25 bp)
GTTATTTAATATTAGCCATCAGGCC
LOC_Os05g26990
Os.38770.1.S1_at--537--1691Chr05:15607765..15607789 (25 bp)
AGCCATCAGGCCCAGTGTAAATTAT
LOC_Os05g26990
Target Sequence 
GTATCATCTCCCAGATTAGAGCTGAACAAGAGCCCAAGAAAAACCTATATGACATCCTTTGGAGCACAGGACTTTTTTCC
CTGATTCCTGNGTGAAATGAACTACATCATCTGAAATTCCTGTGTTCCAAAGGACACTGCACATTTTTTTNAACATTGCC
TGTAAGGCCACATGCAATTCCTTACAAATATGTTGGAATGCCAAAACCCGAGTTATTTAATATTAGCCATCAGGCCCAGT
GTAAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis