Browse Element(s) Details


Os.38817.2.S1_x_at

Description gb:NM_192045.1
DB_XREF= gi:34911173
GEN=B1144G04.34
TID=Os.38817.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.34 (B1144G04.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1144G04.34 (B1144G04.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g488109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38817.2.S1_x_at--109--4131Chr01:28335898..28335922 (25 bp)
CGCGGCCATGAAGGACCCGTTCGAG
LOC_Os01g48810
Os.38817.2.S1_x_at--374--8011Chr01:28336150..28336174 (25 bp)
GGAGGACCACATGGAGGTCGACCTC
LOC_Os01g48810
Os.38817.2.S1_x_at--519--5591Chr01:28336205..28336224 (20 bp)
GACAAGCTCGCCAAGATGAATGCCA
LOC_Os01g48810
Os.38817.2.S1_x_at--208--6331NONE
GATGAATGCCATACTGTCTCAATTT
NONE
Os.38817.2.S1_x_at--1--5451Chr01:28336886..28336910 (25 bp)
GAACCGGTATGAGTCATTCCGCAGA
LOC_Os01g48810
Os.38817.2.S1_x_at--923--7131Chr01:28336898..28336922 (25 bp)
GTCATTCCGCAGATCTGGATTCCAG
LOC_Os01g48810
Os.38817.2.S1_x_at--452--9531NONE
TCTAACATGAAAAAGCTATTGGCGA
NONE
Os.38817.2.S1_x_at--683--10231Chr01:28337887..28337911 (25 bp)
TATTGGCGAGCATTACTGGCAGTCA
LOC_Os01g48810
Os.38817.2.S1_x_at--1056--1931Chr01:28337901..28337925 (25 bp)
ACTGGCAGTCAAAAGATTTCTCTAC
LOC_Os01g48810
Os.38817.2.S1_x_at--426--2331Chr01:28337912..28337936 (25 bp)
AAAGATTTCTCTACCAACAACAATT
LOC_Os01g48810
Os.38817.2.S1_x_at--826--8151Chr01:28338248..28338494 (25 bp)
GGAAAGATTCTGGACCACAAGGGAA
LOC_Os01g48810
Target Sequence 
CGCGGCCATGAAGGACCCGTTCGAGGCGGCGGTGGAGGAGCAGGAGTCGCCGCCGGAGTCGCCGGCGGCGAACGAGGAGG
ACGCGGCCGGGGCGCCCGAGGGATACGACGGCGCCAGCGGGTCGCGCGGGCCTCCGCTGCGGCTGCCTCCTTCGAGGGCC
GCGCCATCGGGCTCCGGTGGTGCCGCCGCGGCCGCGGCGAGGGGTAAGGTGGTGCGGGTCCAGAAGGAGCAGCAGGAGGA
GGAGGATGACGAGGAGGACCACATGGAGGTCGACCTCGACAAGCTGCCCTCCGGCACCAGCGACCCCGACAAGCTCGCCA
AGATGAATGCCATACTGTCTCAATTTACAGAAGACCAGATGAACCGGTATGAGTCATTCCGCAGATCTGGATTCCAGAAA
TCTAACATGAAAAAGCTATTGGCGAGCATTACTGGCAGTCAAAAGATTTCTCTACCAACAACAATTGTAGTATCAGGAAT
TGCAAAGATGTTTGTTGCTAGAATAGTTATGACTGAGAGGAAAGATTCTGGACCACAAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38817.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis