Browse Element(s) Details


Os.38864.1.S1_at

Description gb:AK107563.1
DB_XREF= gi:32992772
TID=Os.38864.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0027B08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C02, full insert sequence.
FL= gb:AK107563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g615108/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61460OsAffx.22940.1.S1_s_at11/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.2.S1_s_at9/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.3.S1_x_at8/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_x_at3/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.22940.5.S1_at2/113+34804694..34805856hypothetical protein
LOC_Os03g61460OsAffx.31552.2.S1_at1/113+34804694..34805856hypothetical protein
LOC_Os03g61470OsAffx.22650.2.S1_x_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.2.S1_at11/113+34809610..34810288expressed protein
LOC_Os03g61470OsAffx.22650.1.S1_x_at2/113+34809610..34810288expressed protein
LOC_Os03g61480OsAffx.22650.1.S1_x_at11/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61480OsAffx.22650.2.S1_x_at1/113+34812844..34813474Protein of unknown function, DUF614 containing protein
LOC_Os03g61490OsAffx.22650.2.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61490OsAffx.22650.1.S1_x_at2/113+34817300..34817943PGPS/D12, putative, expressed
LOC_Os03g61500Os.34496.1.S1_at11/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.2.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61500OsAffx.22650.1.S1_x_at2/113+34822452..34823512PGP224, putative, expressed
LOC_Os03g61510Os.38864.1.S1_at8/113+34830157..34830983pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61530Os.5700.1.S1_at9/113+34834281..34835059pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g61540Os.16897.1.S1_at11/113+34835273..34839862Lipase family protein, expressed
LOC_Os03g61550OsAffx.3666.1.S1_at11/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61550Os.54537.1.S1_at1/113+34843798..34845023DnaJ domain containing protein, expressed
LOC_Os03g61560Os.7256.1.S1_at11/113+34845557..34850961expressed protein
LOC_Os03g61570Os.16297.1.S1_a_at11/113+34852338..34853780expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38864.1.S1_at--61--1451Chr03:34830480..34830504 (25 bp)
AGAACGAGGCGTTCGAGAAGTTCAT
LOC_Os03g61510
Os.38864.1.S1_at--494--2831Chr03:34830463..34830487 (25 bp)
AAGTTCATGCGGGTCACCGGCGCGC
LOC_Os03g61510
Os.38864.1.S1_at--854--1311Chr03:34830432..34830456 (25 bp)
AGATGGTCATCGGAACGGCCGGCGA
LOC_Os03g61510
Os.38864.1.S1_at--69--4271Chr03:34830400..34830424 (25 bp)
CCGGAGCCGTCAGCTGATGAACACT
LOC_Os03g61510
Os.38864.1.S1_at--602--1611Chr03:34830389..34830413 (25 bp)
AGCTGATGAACACTCGGACGAACTA
LOC_Os03g61510
Os.38864.1.S1_at--382--5791Chr03:34830373..34830397 (25 bp)
GACGAACTAATACCGGATGTCCAGT
LOC_Os03g61510
Os.38864.1.S1_at--681--7991Chr03:34830359..34830383 (25 bp)
GGATGTCCAGTTATGATCAATTCAT
LOC_Os03g61510
Os.38864.1.S1_at--111--10551Chr03:34830339..34830363 (25 bp)
TTCATAATGTACTAATCGCTCATGT
LOC_Os03g61510
Os.38864.1.S1_at--176--171NONE
ATTTTCCATTTCGTCGAATGTTTTG
NONE
Os.38864.1.S1_at--973--5271Chr03:34830025..34830049 (25 bp)
GAATGTTTTGTTTAACCATCAATAA
NONE
Os.38864.1.S1_at--875--10451NONE
TTAGCTAACTAATAGATCATCTGAT
NONE
Target Sequence 
AGAACGAGGCGTTCGAGAAGTTCATGCGGGTCACCGGCGCGCTCATCGAGATGGTCATCGGAACGGCCGGCGAGCCGGCG
CCGGAGCCGTCAGCTGATGAACACTCGGACGAACTAATACCGGATGTCCAGTTATGATCAATTCATAATGTACTAATCGC
TCATGTNACTTCTCATCTCCATNTTTTGATCGATCGTGTNCAGGTATTTTGATTAGGTTAATTANGGGNNNGTTCANTTT
GANGTCATTTNCAANCATACNATTTTTTTNTAAAGTTGTCNAAAAAATNTCTANGTTTAGTTTGNTNCTAAATTTGATAA
ATANATAAGAAATCCTGNCAAAANTTNNNNAACATTGTCATCTTACTAAAATTTTGATATCACCAAAATTTAGTAAGGTT
TAGTAAGGTTTATTTTCCATTTCGTCGAATGTTTTGTTTAACCATCAATAAAGTGGTTGATTCGNTCATTAGCTAACTAA
TAGATCATCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis