Browse Element(s) Details


Os.39075.1.S1_at

Description gb:CB682573
DB_XREF= gi:29686298
DB_XREF=OSJNEf10B04.f
CLONE=OSJNEf10B04
TID=Os.39075.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39075 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179871.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1299011/11Phytosulfokine precursor protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12950Os.54629.1.S1_at11/113+6971992..6976294ANT, putative, expressed
LOC_Os03g12960OsAffx.3217.1.S1_at11/113+6983091..6983344hypothetical protein
LOC_Os03g12970OsAffx.25080.1.S1_at11/113+6986053..6986286hypothetical protein
LOC_Os03g12970OsAffx.1780.1.S1_x_at2/113+6986053..6986286hypothetical protein
LOC_Os03g12980OsAffx.12837.1.S1_at10/113+6988854..6989636hypothetical protein
LOC_Os03g12990Os.39075.1.S1_at11/113+6997456..6998414Phytosulfokine precursor protein containing protein, expressed
LOC_Os03g13000Os.28855.1.S1_at11/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13000Os.55138.1.S1_x_at1/113+7001957..7005285GTP-binding protein, putative, expressed
LOC_Os03g13010Os.8251.1.S1_at11/113+7008263..7010744U-box domain containing protein, expressed
LOC_Os03g13020Os.45967.1.A1_at1/113+7013512..7015658hypothetical protein
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39075.1.S1_at--531--2631Chr03:6997842..6997866 (25 bp)
AACCTGATCAGGCAGTGGAGTGCAA
LOC_Os03g12990
Os.39075.1.S1_at--928--8011Chr03:6997899..6997923 (25 bp)
GGAGGACACTAGTTGCTCACACCGA
LOC_Os03g12990
Os.39075.1.S1_at--39--5131Chr03:6997998..6998022 (25 bp)
GCACAAGTTTCTGCCCAGGGTAGTT
LOC_Os03g12990
Os.39075.1.S1_at--111--3331Chr03:6998028..6998052 (25 bp)
CACGGGAATTTTCCACGATTCTTGG
LOC_Os03g12990
Os.39075.1.S1_at--767--5271Chr03:6998055..6998079 (25 bp)
GAATGAACTAGCTCTGACGCACAGT
LOC_Os03g12990
Os.39075.1.S1_at--960--5791Chr03:6998070..6998094 (25 bp)
GACGCACAGTTTCTACAAGATCTTC
LOC_Os03g12990
Os.39075.1.S1_at--1122--1271Chr03:6998087..6998111 (25 bp)
AGATCTTCTGTGAATTCCTGCGTTC
LOC_Os03g12990
Os.39075.1.S1_at--258--6431Chr03:6998154..6998178 (25 bp)
GATCTTCTGCAGTTCATTTCTGTGG
LOC_Os03g12990
Os.39075.1.S1_at--604--8531Chr03:6998245..6998269 (25 bp)
TGGACTATCTGTACATTTCTCGCTC
LOC_Os03g12990
Os.39075.1.S1_at--488--6731Chr03:6998273..6998297 (25 bp)
GTTCTTCAGCCCGTATATCCATTCT
LOC_Os03g12990
Os.39075.1.S1_at--77--3931Chr03:6998305..6998329 (25 bp)
CGGCCATCACCTTCAGATAGTACAT
LOC_Os03g12990
Target Sequence 
AACCTGATCAGGCAGTGGAGTGCAAGGGAGGGGAAGCAGAGGAAGAGTGCCTGATGAGGAGGACACTAGTTGCTCACACC
GACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATATGCACCNGTGCTCTTTGGCAC
AAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCCACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTT
CTACAAGATCTTCTGTGAATTCCTGCGTTCAAACAAGCAAAGAAGAAAGGCTTGATGAGGCAAACGGATANCGATCTTCT
GCAGTTCATTTCTGTGGATTGTACCAACCCCCCCCCCCCCCCNTTTTTTTTTTTTGCGGGGAGTGGATTGTACCAACTTT
GTAGTGGACTATCTGTACATTTCTCGCTCCTTGTTCTTCAGCCCGTATATCCATTCTCGACTTCCGGCCATCACCTTCAG
ATAGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis