Browse Element(s) Details


Os.39173.1.S1_at

Description gb:AK066329.1
DB_XREF= gi:32976347
TID=Os.39173.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.39173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060D13, full insert sequence.
FL= gb:AK066329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4778011/1160S ribosomal protein L18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47730OsAffx.21897.5.S1_x_at4/117+28510359..28513299retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47740NANA7+28513619..28519714retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g47750Os.50018.1.S1_at11/117+28530232..28531008expressed protein
LOC_Os07g47760Os.55286.1.S1_at11/117+28532570..28533634expressed protein
LOC_Os07g47770OsAffx.28947.1.S1_at11/117+28534147..28534877expressed protein
LOC_Os07g47780Os.39173.1.S1_at11/117+28535893..2853841160S ribosomal protein L18, putative, expressed
LOC_Os07g47790Os.8920.1.S1_at11/117+28539007..28540103AP2 domain containing protein, expressed
LOC_Os07g47800OsAffx.424.1.S1_at10/117+28541770..28544079hAT family dimerisation domain containing protein
LOC_Os07g47810OsAffx.16754.1.S1_at11/117+28548084..28549626hypothetical protein
LOC_Os07g47820Os.27104.1.S2_at11/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47820Os.27104.1.S1_at10/117+28550948..28557326Acyl-CoA dehydrogenase, C-terminal domain containing protein, expressed
LOC_Os07g47830Os.11456.1.S1_at6/117+28557393..28561263Pectinesterase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39173.1.S1_at--93--511Chr07:28536478..28536502 (25 bp)
ATCGTGGGCACCGTCACAGATGACA
LOC_Os07g47780
Os.39173.1.S1_at--98--5831Chr07:28536555..28536579 (25 bp)
GACCGCGAGAGCACGGATCATCAAT
LOC_Os07g47780
Os.39173.1.S1_at--37--3031Chr07:28536577..28536601 (25 bp)
AATGCCGGTGGCGAGTGCCTCACGT
LOC_Os07g47780
Os.39173.1.S1_at--45--5411Chr07:28538052..28538076 (25 bp)
GAAGCTGTTAAGCACTTTGGCCCTG
LOC_Os07g47780
Os.39173.1.S1_at--698--951Chr07:28538081..28538105 (25 bp)
AGGAGTTCCCCACAGCAACACTAAG
LOC_Os07g47780
Os.39173.1.S1_at--1027--2811Chr07:28538179..28538203 (25 bp)
AAGTTGTGGCAGCTTTGGCACCATT
LOC_Os07g47780
Os.39173.1.S1_at--804--5671Chr07:28538228..28538252 (25 bp)
GACATCACTGTTTTGGATGCCAGAC
LOC_Os07g47780
Os.39173.1.S1_at--972--6351Chr07:28538243..28538267 (25 bp)
GATGCCAGACTTGCACTGTTGTTTT
LOC_Os07g47780
Os.39173.1.S1_at--53--8571Chr07:28538267..28538291 (25 bp)
TGGATGCTAGACTTACACTGTTTTA
LOC_Os07g47780
Os.39173.1.S1_at--214--10351Chr07:28538338..28538362 (25 bp)
TTTACCTCCTTTGCACTTCAAGATA
LOC_Os07g47780
Os.39173.1.S1_at--716--2811Chr07:28538357..28538381 (25 bp)
AAGATATTTGTTTGGCGTCTCGCAT
LOC_Os07g47780
Target Sequence 
ATCGTGGGCACCGTCACAGATGACAAGAGGATCTATGAGGTGCCGGCGATGAAGGTGGCTGCTCTCAGGTTCACCGAGAC
CGCGAGAGCACGGATCATCAATGCCGGTGGCGAGTGCCTCACGTTCGACCAGCTCGCTCTCCGCGCCCCGCTTGGCCAGA
ACACGGTCCTCCTGAGGGGTCCCAAGAACGCTAGGGAAGCTGTTAAGCACTTTGGCCCTGCTCCAGGAGTTCCCCACAGC
AACACTAAGCCATATGTTCGCTCAANAGGGAAGGAAATTTGAGAAGGCAAGAGGAAGAAGGAACAGCAAGGGCTTCAAGG
TATAAGTTGTGGCAGCTTTGGCACCATTACACCAAACTGCTCATATCAGTTAGACATCACTGTTTTGGATGCCAGACTTG
CACTGTTGTTTTGGATGCTAGACTTACACTGTTTTAGATGTCAAAATATTGTGTTACTGACTTCACAGGAACAATTAAAT
TGTTTACCTCCTTTGCACTTCAAGATATTTGTTTGGCGTCTCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis