Browse Element(s) Details


Os.39420.2.S1_at

Description gb:NM_190291.1
DB_XREF= gi:34907665
GEN=P0506A10.19
TID=Os.39420.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39420 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transporter-like protein (P0506A10.19), mRNA.
PROD=putative transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6733011/11nucleotide-sugar transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015780biological_processnucleotide-sugar transport
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005456molecular_functionCMP-sialic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39420.2.S1_at--277--9551Chr01:39417008..39417289 (25 bp)
TCTATTGCTACTGAGCTCACATTTC
LOC_Os01g67330
Os.39420.2.S1_at--939--10211Chr01:39417010..39417291 (25 bp)
TATTGCTACTGAGCTCACATTTCTG
LOC_Os01g67330
Os.39420.2.S1_at--392--10731Chr01:39417012..39417293 (25 bp)
TTGCTACTGAGCTCACATTTCTGAC
LOC_Os01g67330
Os.39420.2.S1_at--146--9091Chr01:39417013..39417294 (25 bp)
TGCTACTGAGCTCACATTTCTGACA
LOC_Os01g67330
Os.39420.2.S1_at--538--4851Chr01:39417014..39417295 (25 bp)
GCTACTGAGCTCACATTTCTGACAG
LOC_Os01g67330
Os.39420.2.S1_at--1091--9911Chr01:39417016..39417297 (25 bp)
TACTGAGCTCACATTTCTGACAGAG
LOC_Os01g67330
Os.39420.2.S1_at--526--1971Chr01:39417278..39417298 (21 bp)
ACTGAGCTCACATTTCTGACAGAGC
LOC_Os01g67330
Os.39420.2.S1_at--640--8911Chr01:39417278..39417300 (23 bp)
TGAGCTCACATTTCTGACAGAGCTG
LOC_Os01g67330
Os.39420.2.S1_at--403--4831Chr01:39417279..39417303 (25 bp)
GCTCACATTTCTGACAGAGCTGCCA
LOC_Os01g67330
Os.39420.2.S1_at--756--3311Chr01:39417282..39417306 (25 bp)
CACATTTCTGACAGAGCTGCCAACT
LOC_Os01g67330
Os.39420.2.S1_at--36--3591Chr01:39417284..39417308 (25 bp)
CATTTCTGACAGAGCTGCCAACTGA
LOC_Os01g67330
Target Sequence 
TCTATTGCTACTGAGCTCACATTTCTGACAGAGCTGCCAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39420.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis