Browse Element(s) Details


Os.39420.2.S1_x_at

Description gb:NM_190291.1
DB_XREF= gi:34907665
GEN=P0506A10.19
TID=Os.39420.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39420 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transporter-like protein (P0506A10.19), mRNA.
PROD=putative transporter-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6733010/11nucleotide-sugar transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein
LOC_Os01g67320OsAffx.11770.1.S1_at9/111+39405405..39408990expressed protein
LOC_Os01g67330Os.39420.1.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_at11/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67330Os.39420.2.S1_x_at10/111+39411930..39417878nucleotide-sugar transporter family protein, putative, expressed
LOC_Os01g67340Os.12116.1.S1_at11/111+39418583..39422180Protein kinase domain containing protein, expressed
LOC_Os01g67350OsAffx.11771.1.S1_at11/111+39425858..39428613expressed protein
LOC_Os01g67350Os.39110.1.S1_s_at11/111+39425858..39428613expressed protein
LOC_Os01g67360Os.30516.1.S1_at11/111+39429126..39432613methyltransferase family protein, expressed
LOC_Os01g67364OsAffx.32292.1.A1_at7/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.30475.4.S1_at3/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32280.1.S1_at1/111+39441530..39444085hypothetical protein
LOC_Os01g67364OsAffx.32228.1.A1_x_at1/111+39441530..39444085hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015780biological_processnucleotide-sugar transport
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005456molecular_functionCMP-sialic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39420.2.S1_x_at--1068--10071Chr01:39415686..39415710 (25 bp)
TAGGGCTTGTGATCACTGCCATCAT
LOC_Os01g67330
Os.39420.2.S1_x_at--214--3831NONE
CTGCCATCATCCAAGGTCCTAGTAG
NONE
Os.39420.2.S1_x_at--158--4531Chr01:39416267..39416291 (25 bp)
GCCGCTCAGGGCATATTATCGTCAT
LOC_Os01g67330
Os.39420.2.S1_x_at--910--5331Chr01:39416565..39416589 (25 bp)
GAAGTACTCATCAACAATCGCCACA
LOC_Os01g67330
Os.39420.2.S1_x_at--871--4971Chr01:39416605..39416629 (25 bp)
GCATCTGCTGTGTTGTTTGGTCATA
LOC_Os01g67330
Os.39420.2.S1_x_at--315--10131Chr01:39416303..39416781 (25 bp)
TATGCATCAGTATCTCTCGAACCAA
LOC_Os01g67330
Os.39420.2.S1_x_at--431--5251Chr01:39416981..39417005 (25 bp)
GAATCTGTAGTCGTCAACGTGTCTG
LOC_Os01g67330
Os.39420.2.S1_x_at--55--2591Chr01:39416996..39417020 (25 bp)
AACGTGTCTGATTCTATTGCTACTG
LOC_Os01g67330
Os.39420.2.S1_x_at--393--10731Chr01:39417012..39417293 (25 bp)
TTGCTACTGAGCTCACATTTCTGAC
LOC_Os01g67330
Os.39420.2.S1_x_at--37--3591Chr01:39417284..39417308 (25 bp)
CATTTCTGACAGAGCTGCCAACTGA
LOC_Os01g67330
Os.39420.2.S1_x_at--991--331Chr01:39417308..39417332 (25 bp)
ATACAATTCAGCTTGGTTCCACACC
LOC_Os01g67330
Target Sequence 
TAGGGCTTGTGATCACTGCCATCATCCAAGGTCCTAGTAGCTTTAATATTCTGGAAGGGCATTCAAAGGCCACAATGTTT
CTTATTTGCAACAATGCCGCTCAGGGCATATTATCGTCATTTTTCTTCAAATATGCAGATACAATATTGAAGAAGTACTC
ATCAACAATCGCCACAATCTTTACTGGAGTAGCATCTGCTGTGTTGTTTGGTCATACTCTGACCATAAATTTTGTTCTTG
CAATATCAATAGTAATTATATCTATGCATCAGTATCTCTCGAACCAAATTAAGGATGAAGTTCCGAGCAGTAAAATTGAG
ATGGGTGATGCTCATGAGCACAGATCGAAGGAATCTGTAGTCGTCAACGTGTCTGATTCTATTGCTACTGAGCTCACATT
TCTGACAGAGCTGCCAACTGATACAATTCAGCTTGGTTCCACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39420.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis