Browse Element(s) Details


Os.39596.1.A1_x_at

Description gb:CF312936
DB_XREF= gi:33684697
DB_XREF=ABF--08-O03.g1
CLONE=ABF--08-O03
TID=Os.39596.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39596 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g205901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20540NANA5+12039106..12039442hypothetical protein
LOC_Os05g20550NANA5+12040339..12041052retrotransposon, putative, centromere-specific
LOC_Os05g20560NANA5+12043000..12044515retrotransposon, putative, centromere-specific, expressed
LOC_Os05g20570Os.22396.1.S1_at11/115+12048811..12049866pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g20579NANA5+12053572..12053991NA
LOC_Os05g20590OsAffx.14771.1.S1_at11/115+12064091..12065637hypothetical protein
LOC_Os05g20590Os.39596.1.A1_x_at1/115+12064091..12065637hypothetical protein
LOC_Os05g20590Os.31845.2.S1_x_at1/115+12064091..12065637hypothetical protein
LOC_Os05g20600NANA5+12068562..12068888hypothetical protein
LOC_Os05g20610NANA5+12070423..12071679retrotransposon protein, putative, unclassified, expressed
LOC_Os05g20620Os.53842.1.S2_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.1.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.2.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.46610.1.A1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.22452.1.S1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.27810.1.S1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20630Os.46610.1.A1_x_at3/115+12080425..12084817hypothetical protein
LOC_Os05g20630OsAffx.3347.1.S1_at1/115+12080425..12084817hypothetical protein
LOC_Os05g20640NANA5+12085539..12085985hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39596.1.A1_x_at--587--7051NONE
GTAATGGGCTGCTTCTTTTAGGGCT
NONE
Os.39596.1.A1_x_at--730--9771NONE
TAATGGGCTGCTTCTTTTAGGGCTT
NONE
Os.39596.1.A1_x_at--692--2971NONE
AATGGGCTGCTTCTTTTAGGGCTTG
NONE
Os.39596.1.A1_x_at--333--791NONE
ATGGGCTGCTTCTTTTAGGGCTTGA
NONE
Os.39596.1.A1_x_at--304--8651NONE
TGGGCTGCTTCTTTTAGGGCTTGAA
NONE
Os.39596.1.A1_x_at--599--7571NONE
GGGCTGCTTCTTTTAGGGCTTGAAC
NONE
Os.39596.1.A1_x_at--899--8311NONE
GGCTGCTTCTTTTAGGGCTTGAACT
NONE
Os.39596.1.A1_x_at--857--4751NONE
GCTGCTTCTTTTAGGGCTTGAACTT
NONE
Os.39596.1.A1_x_at--952--9532Chr05:12064486..12064539 (25 bp)
TCTTTTAGGGCTTGAACTTAATGGG
LOC_Os05g20590
Os.39596.1.A1_x_at--583--10831NONE
TTGGGTAGACAAGCTTCCCCTGTTT
NONE
Os.39596.1.A1_x_at--837--8631NONE
TGGGTAGACAAGCTTCCCCTGTTTT
NONE
Target Sequence 
GTAATGGGCTGCTTCTTTTAGGGCTTGAACTTAATGGGGTAAACCCCTAGTCGGGGGGTTTGTGGATTGGGTAGACAAGC
TTCCCCTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39596.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis