Browse Element(s) Details


Os.22396.1.S1_at

Description gb:AK120717.1
DB_XREF= gi:37990340
TID=Os.22396.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002D08, full insert sequence.
FL= gb:AK120717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2057011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g20520Os.45173.5.S1_x_at4/115+12024415..12026346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g20530NANA5+12033076..12036159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g20540NANA5+12039106..12039442hypothetical protein
LOC_Os05g20550NANA5+12040339..12041052retrotransposon, putative, centromere-specific
LOC_Os05g20560NANA5+12043000..12044515retrotransposon, putative, centromere-specific, expressed
LOC_Os05g20570Os.22396.1.S1_at11/115+12048811..12049866pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g20579NANA5+12053572..12053991NA
LOC_Os05g20590OsAffx.14771.1.S1_at11/115+12064091..12065637hypothetical protein
LOC_Os05g20590Os.39596.1.A1_x_at1/115+12064091..12065637hypothetical protein
LOC_Os05g20590Os.31845.2.S1_x_at1/115+12064091..12065637hypothetical protein
LOC_Os05g20600NANA5+12068562..12068888hypothetical protein
LOC_Os05g20610NANA5+12070423..12071679retrotransposon protein, putative, unclassified, expressed
LOC_Os05g20620Os.53842.1.S2_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.1.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.53842.2.S1_x_at11/115+12073230..12081647expressed protein
LOC_Os05g20620Os.46610.1.A1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.22452.1.S1_x_at1/115+12073230..12081647expressed protein
LOC_Os05g20620OsAffx.27810.1.S1_x_at1/115+12073230..12081647expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22396.1.S1_at--1032--5971Chr05:12049269..12049293 (25 bp)
GAGACAAGGCTACGGCGAAGATCAT
LOC_Os05g20570
Os.22396.1.S1_at--613--6391Chr05:12049328..12049352 (25 bp)
GATCGGCCCTTCAAGCAGTCCGGGA
LOC_Os05g20570
Os.22396.1.S1_at--446--3371Chr05:12049343..12049367 (25 bp)
CAGTCCGGGATCAACAACCCCTTGG
LOC_Os05g20570
Os.22396.1.S1_at--96--2431Chr05:12049401..12049425 (25 bp)
AAAACTGCATGACACTGGCCAGCAT
LOC_Os05g20570
Os.22396.1.S1_at--610--6031Chr05:12049464..12049488 (25 bp)
GAGATGTCACGTCATTCGATCAGGA
LOC_Os05g20570
Os.22396.1.S1_at--1013--5811Chr05:12049601..12049625 (25 bp)
GACCCGACCTGCGTTTGTTGTGTAG
LOC_Os05g20570
Os.22396.1.S1_at--901--6811Chr05:12049658..12049682 (25 bp)
GTTTATCATTTTGTACTGAGTTCAC
LOC_Os05g20570
Os.22396.1.S1_at--948--8891Chr05:12049674..12049698 (25 bp)
TGAGTTCACTAATTTGTTCCATTTG
LOC_Os05g20570
Os.22396.1.S1_at--266--3851Chr05:12049776..12049800 (25 bp)
CTGCAGGGCAGTGTGGGTATATATA
LOC_Os05g20570
Os.22396.1.S1_at--339--6631Chr05:12049805..12049829 (25 bp)
GTTGTAACAACCATACGCGTTTTCA
LOC_Os05g20570
Os.22396.1.S1_at--438--4131Chr05:12049820..12049844 (25 bp)
CGCGTTTTCAAAGCTCGTATGCAAT
LOC_Os05g20570
Target Sequence 
GAGACAAGGCTACGGCGAAGATCATGCTNNNNNTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCC
GGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGGCCAGCATGAT
ATGAGACTCATGNAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGG
ACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTT
GTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTACGTTTATCATTT
TGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAATCTTTGTTGTTGTTAGTGTCGAATAGTT
AATTACTAGGGGTTCCTTCCCCCGTTGCTGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTC
AAAGCTCGTATGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis