Browse Element(s) Details


Os.39764.1.S1_x_at

Description gb:AU082101
DB_XREF= gi:6552273
DB_XREF=AU082101
CLONE=S16141
TID=Os.39764.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39764 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g308705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30790Os.52356.1.S1_at2/1111+17431614..17437815expressed protein
LOC_Os11g30810Os.5230.1.S1_at11/1111+17440824..17442659Sulfotransferase domain containing protein, expressed
LOC_Os11g30820Os.15237.1.S1_at11/1111+17443380..17445669expressed protein
LOC_Os11g30830NANA11+17450136..17450678Flavonol sulfotransferase, putative
LOC_Os11g30840NANA11+17450910..17454486retrotransposon protein, putative, unclassified
LOC_Os11g30850OsAffx.22385.1.S1_x_at3/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30850OsAffx.20329.1.S1_at1/1111+17457815..17459028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30860NANA11+17459206..17462217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30870Os.39764.1.S1_at6/1111+17462561..17464283hypothetical protein
LOC_Os11g30870Os.39764.1.S1_x_at5/1111+17462561..17464283hypothetical protein
LOC_Os11g30880NANA11+17467650..17468333retrotransposon protein, putative, unclassified
LOC_Os11g30890OsAffx.19093.1.S1_at10/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.10222.1.S1_x_at2/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.6693.1.S1_at1/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30899NANA11+17479922..17481225NA
LOC_Os11g30910Os.27466.1.S1_at11/1111+17482242..17483997Sulfotransferase domain containing protein, expressed
LOC_Os11g30920OsAffx.1319.1.S1_at1/1111+17488463..17491126transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39764.1.S1_x_at--462--2611Chr11:7439538..7439562 (25 bp)
AACGCCGGGTGCTGCTGGAACTCGA
NONE
Os.39764.1.S1_x_at--258--2531Chr11:7439556..7439579 (24 bp)
AACTCGAGGACCTGCTGACGAACGC
NONE
Os.39764.1.S1_x_at--596--4171NONE
CGCCATCCCACGAAGCCGGTGATGA
NONE
Os.39764.1.S1_x_at--125--5855Chr11:7455141..7455165 (25 bp)
GACCATTTGGTCCTATGTTCTAAGA
NONE
Os.39764.1.S1_x_at--438--4333Chr11:7455143..7455167 (25 bp)
CCATTTGGTCCTATGTTCTAAGACT
NONE
Os.39764.1.S1_x_at--1121--10236Chr11:7455146..7455170 (25 bp)
TTTGGTCCTATGTTCTAAGACTGCC
NONE
Os.39764.1.S1_x_at--622--77913Chr12:13477609..13477635 (25 bp)
GGTCCTATGTTCTAAGACTGCCTGC
NONE
Os.39764.1.S1_x_at--583--92511Chr12:13477611..13477636 (24 bp)
TCCTATGTTCTAAGACTGCCTGCGG
NONE
Os.39764.1.S1_x_at--867--3699Chr11:7455153..7455177 (25 bp)
CTATGTTCTAAGACTGCCTGCGGGC
NONE
Os.39764.1.S1_x_at--501--10117Chr11:7455154..7455178 (25 bp)
TATGTTCTAAGACTGCCTGCGGGCC
NONE
Os.39764.1.S1_x_at--1113--8797Chr11:7455156..7455180 (25 bp)
TGTTCTAAGACTGCCTGCGGGCCTA
NONE
Target Sequence 
AACGCCGGGTGCTGCTGGAACTCGAGGACCTGCTGACGAACGCCTGCGCGCTCGCCGCCGTCGGCATCCTNTGCTTCCTT
ACCGCCTCCCCACCGCGACGCCGCGTTTCGCCGACTCGCCATCCCACGAAGCCGGTGATGAAGTCTCGGATGACCCATAT
GCTTACTACCAGGAGGNTGNNGAAGATGGCGNCGCTTAGTAGGTCTTAGTTACGGTCGTTGCCTGTGGCAATGGTGTCNC
CGCTGCCTTGNNTCCGCTGCTTATCTATTTNCTNCTTTTGGATGTATTCCGGACCATTTGGTCCTATGTTCTAAGACTGC
CTGCGGGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39764.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis