Browse Element(s) Details


Os.39963.1.S1_at

Description gb:CB679262
DB_XREF= gi:29682987
DB_XREF=OSJNEf02I20.f
CLONE=OSJNEf02I20
TID=Os.39963.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39963 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47914 (A.thaliana) T47914 hypothetical protein T20K12.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g302001/11Asparaginyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30160Os.25244.1.S1_at9/117+17814498..17819065trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class
LOC_Os07g30190NANA7+17830368..17836580retrotransposon protein, putative, unclassified
LOC_Os07g30200Os.27164.1.A1_a_at11/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.27164.2.S1_at7/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.39963.1.S1_at1/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30210Os.50403.1.S1_at10/117+17844131..17847023Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g30220Os.15994.1.S1_at11/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.7245.1.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.2609.2.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30230OsAffx.22940.2.S1_s_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.3.S1_x_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.18.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.3.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.1.S1_s_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.2.S1_at8/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.31552.2.S1_at1/117+17855416..17862970transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006421biological_processasparaginyl-tRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004815molecular_functionaspartate-tRNA ligase activity
GO:0004816molecular_functionasparagine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39963.1.S1_at--125--5711Chr04:26365362..26365492 (25 bp)
GACTACTAAGATGGCTCGTCAACAA
NONE
Os.39963.1.S1_at--199--4511Chr04:26365619..26365643 (25 bp)
GCCGTTCGTGGCGTACAAGATGGCC
NONE
Os.39963.1.S1_at--1118--3451Chr04:26365844..26365868 (25 bp)
CAGGGAGGCGTCATTCCTGGAATGA
NONE
Os.39963.1.S1_at--1035--5251Chr04:26365863..26365887 (25 bp)
GAATGACGGCGGAGAGGTCTCAAAA
NONE
Os.39963.1.S1_at--1156--6111Chr04:26365876..26365900 (25 bp)
GAGGTCTCAAAAACGAGGCCCATTG
NONE
Os.39963.1.S1_at--663--2591Chr04:26365887..26365911 (25 bp)
AACGAGGCCCATTGAAGACGGATGA
NONE
Os.39963.1.S1_at--601--3451Chr04:26365900..26365924 (25 bp)
GAAGACGGATGAAAGCAAGTTTAAT
NONE
Os.39963.1.S1_at--394--10051Chr04:26365924..26365948 (25 bp)
TAGTATAGGCAACTTATGGCTCTAA
NONE
Os.39963.1.S1_at--235--10431Chr04:26365937..26365961 (25 bp)
TTATGGCTCTAAGGGATGTTTGGTT
NONE
Os.39963.1.S1_at--1058--6273Chr04:26365951..26365975 (25 bp)
GATGTTTGGTTGATGTCTAATCTTA
NONE
Os.39963.1.S1_at--934--4997Chr07:21881817..21881840 (24 bp)
GCATGGTGGCACAAATGTGGCTTAC
NONE
Target Sequence 
GACTACTAAGATGGCTCGTCAACAACGAGGATCTGNGGAAGGAGCTGGACGACGTTGATAACCTCACCGAGGAACGGCTG
GACGAGGTGCTGGACAGCTTCCTGAAAGACTTCGAGGCCGGCGCGCTGGAGGCGCACGGGTGGCCGACGGCGCCGTTCGT
GGCGTACAAGATGGCCAAGGTGGCCATGAACGCGTACACGAGGATCTTGGCGAGGAGGCACCCGGAGCTGCGCGTCAACT
GCGTGCACCCGGGCTACGTCAAGACGGACATGACCATCAACTCGGGGTTCCTGACGCCCGAGGAGGGCGGGAGGAACGTC
GTGACGGTGGCCCTCCTGCCGGACGGCGGCCCGACCGGCGCGTACTTCGACGAGGGCAGGGAGGCGTCATTCCTGGAATG
ACGGCGGAGAGGTCTCAAAAACGAGGCCCATTGAAGACGGATGAAAGCAAGTTTAATAGTATAGGCAACTTATGGCTCTA
AGGGATGTTTGGTTGATGTCTAATCTTATTATAACTAAGTTTAAATTANTTGTGGCATGGTGGCACAAATGTGGCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis