Browse Element(s) Details


Os.39971.1.A1_at

Description gb:AK120974.1
DB_XREF= gi:37990597
TID=Os.39971.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041I07, full insert sequence.
FL= gb:AK120974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0379011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein
LOC_Os02g03830Os.20156.1.S1_at5/112+1611135..1611557expressed protein
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39971.1.A1_at--298--9091Chr02:1598711..1598735 (25 bp)
TGCTACGCGGTATTCAGACTGGTGA
LOC_Os02g03790
Os.39971.1.A1_at--1040--9471Chr02:1598757..1598781 (25 bp)
TCACAAGGTGGTTTCCGGGTTCAGT
LOC_Os02g03790
Os.39971.1.A1_at--560--7671Chr02:1598773..1598797 (25 bp)
GGGTTCAGTCGTAAGAGGCTCATCT
LOC_Os02g03790
Os.39971.1.A1_at--589--351Chr02:1598803..1598827 (25 bp)
ATAAGCCAGGCCGTCATGCATCATC
LOC_Os02g03790
Os.39971.1.A1_at--853--8871Chr02:1598915..1598939 (25 bp)
TGATGGTGGCATCGATCACCGACTC
LOC_Os02g03790
Os.39971.1.A1_at--251--211Chr02:1598941..1598965 (25 bp)
ATTTCCATTCCTCCTTTGCGAGATT
LOC_Os02g03790
Os.39971.1.A1_at--713--4611Chr02:1598958..1598982 (25 bp)
GCGAGATTCTCTTATTGCAGCAGGT
LOC_Os02g03790
Os.39971.1.A1_at--620--1531Chr02:1598976..1599000 (25 bp)
AGCAGGTGCAACTCTCCGAGCGAAA
LOC_Os02g03790
Os.39971.1.A1_at--1049--1311Chr02:1599013..1599037 (25 bp)
AGAGGCACATGCGTTTTACACCACC
LOC_Os02g03790
Os.39971.1.A1_at--1139--2151Chr02:1599030..1599054 (25 bp)
ACACCACCGTATAGTAGTTCTGATA
LOC_Os02g03790
Os.39971.1.A1_at--454--6891Chr02:1599172..1599196 (25 bp)
GTATAGCTTGACTCATTGACTGATT
LOC_Os02g03790
Target Sequence 
TGCTACGCGGTATTCAGACTGGTGATCAAACTGAAACACCACCTGCTCACAAGGTGGTTTCCGGGTTCAGTCGTAAGAGG
CTCATCTACACCATAAGCCAGGCCGTCATGCATCATCTTCCTCCGCCATTGCCAACAGTTTATACAGAAAGGGCAATGGT
GAAGATCACAAGAAAAGAATAATGGCAGCCTGGTGGTGATGGACTGATGGTGGCATCGATCACCGACTCCATTTCCATTC
CTCCTTTGCGAGATTCTCTTATTGCAGCAGGTGCAACTCTCCGAGCGAAAAAAGAAAACAGGAGAGGCACATGCGTTTTA
CACCACCGTATAGTAGTTCTGATAGATGTAAATTGAAGCTTACAGGTTCAGATATGAGATTCAGAGAGTTTTTCTTTTTC
TTTTTGGATGTAATGGAAACTGAAATGAACAGAGAGAAAAAAAAGAGTGTGGTGGGGTTATGTATAGCTTGACTCATTGA
CTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39971.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis