Browse Element(s) Details


Os.39981.1.S1_at

Description gb:AK120606.1
DB_XREF= gi:37990229
TID=Os.39981.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.39981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151A19, full insert sequence.
FL= gb:AK120606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5023011/11Peptidase family M48 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed
LOC_Os02g50210Os.7229.1.S1_at10/112+30652557..30653352Erwinia induced protein 2, putative, expressed
LOC_Os02g50220OsAffx.24807.1.S1_at10/112+30655447..30658484expressed protein
LOC_Os02g50220Os.50196.2.S1_x_at1/112+30655447..30658484expressed protein
LOC_Os02g50230Os.39981.1.S1_at11/112+30663348..30667188Peptidase family M48 containing protein, expressed
LOC_Os02g50240Os.7909.1.S1_at11/112+30668911..30672790Glutamine synthetase root isozyme 3, putative, expressed
LOC_Os02g50250OsAffx.3025.1.S1_at11/112+30679458..30680309hypothetical protein
LOC_Os02g50260OsAffx.19972.1.S1_at3/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50260Os.38172.1.S1_x_at2/112+30685344..30687619transposon protein, putative, unclassified
LOC_Os02g50270Os.18106.1.S1_at11/112+30689482..30692532ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39981.1.S1_at--843--1451Chr02:30666675..30666699 (25 bp)
AGAAGTTAGCTCTGGCCAAGGCACT
LOC_Os02g50230
Os.39981.1.S1_at--684--6831Chr02:30666704..30666728 (25 bp)
GTTTCCTGTAGGTTCTATGGCTTCA
LOC_Os02g50230
Os.39981.1.S1_at--1110--1611Chr02:30666751..30666775 (25 bp)
AGCTGGTTTCTTACTAGTGCCCTAA
LOC_Os02g50230
Os.39981.1.S1_at--1058--3831Chr02:30666798..30666822 (25 bp)
CTGCACAGCGTCATCCTATAATTTT
LOC_Os02g50230
Os.39981.1.S1_at--192--1131Chr02:30666846..30666870 (25 bp)
AGTGCTTGGTATCGCCAGTTCTGAA
LOC_Os02g50230
Os.39981.1.S1_at--143--9831Chr02:30666880..30666904 (25 bp)
TAAATGTGTACCCTCGTTACCGAAG
LOC_Os02g50230
Os.39981.1.S1_at--125--951Chr02:30666906..30666930 (25 bp)
AGGAAGTCAGCTGCGTCATCTGTGA
LOC_Os02g50230
Os.39981.1.S1_at--313--6631Chr02:30667030..30667054 (25 bp)
GTTGGTGATCAGTCCAGTAGCTCTT
LOC_Os02g50230
Os.39981.1.S1_at--452--10671Chr02:30667090..30667114 (25 bp)
TTGCATCATGGCTGGTTAGACTTCA
LOC_Os02g50230
Os.39981.1.S1_at--351--5551Chr02:30667115..30667139 (25 bp)
GAAACTGGAACCTTTGATGTGCTTG
LOC_Os02g50230
Os.39981.1.S1_at--441--7331Chr02:30667133..30667157 (25 bp)
GTGCTTGTGCTGTTCATTCAATCCA
LOC_Os02g50230
Target Sequence 
AGAAGTTAGCTCTGGCCAAGGCACTGAAGGTTTCCTGTAGGTTCTATGGCTTCAGATTCAGATCTCAAAACTCTCGAGCT
GGTTTCTTACTAGTGCCCTAACAAAAGAACACGCTCTTACCAGCTGCACAGCGTCATCCTATAATTTTTTGGTTGTTTCT
TTCTGCGTCTGAGTGCTTGGTATCGCCAGTTCTGAATTCTGAGGGTAAATGTGTACCCTCGTTACCGAAGCAGGAAGTCA
GCTGCGTCATCTGTGACTAGGAAAGAGTAAATACTAGTACTACATTTTTTTTTGTGTCAATAATTGTTGATTTACAGCAC
TTTTTTTNGCCCCCATTGCCCTTCGGTTCGTCGATGTTGGTGATCAGTCCAGTAGCTCTTGTTATTACCAATCTAGTCTA
CCAAATCGTGGATAATTGCATCATGGCTGGTTAGACTTCAGAAACTGGAACCTTTGATGTGCTTGTGCTGTTCATTCAAT
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis