Browse Element(s) Details


Os.39982.1.S1_at

Description gb:CF312224
DB_XREF= gi:33683985
DB_XREF=ABF--07-N11.b1
CLONE=ABF--07-N11
TID=Os.39982.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.14 (P0470A12.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6839011/11Uncharacterized ACR, COG1565 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68359NANA1+40050018..40050158NA
LOC_Os01g68370Os.7360.1.S1_a_at11/111+40050020..40053833Viviparous protein homolog, putative, expressed
LOC_Os01g68380Os.12849.2.S1_x_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68380Os.12849.1.S1_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68390Os.39982.1.S1_at11/111+40063962..40068555Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g68400NANA1+40069219..40069830hypothetical protein
LOC_Os01g68410OsAffx.22848.3.S1_x_at3/111+40077743..40083688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68420OsAffx.11787.2.S1_at7/111+40089745..40090563hypothetical protein
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39982.1.S1_at--944--5751Chr01:40064864..40064888 (25 bp)
GACGGGAGGACTTTGGATCATCGCA
LOC_Os01g68390
Os.39982.1.S1_at--915--6431Chr01:40064849..40064873 (25 bp)
GATCATCGCAACTATCTTGAGGCTC
LOC_Os01g68390
Os.39982.1.S1_at--394--211Chr01:40064604..40064628 (25 bp)
ATATTTTCTTCCCAACCGATTTCTG
LOC_Os01g68390
Os.39982.1.S1_at--334--5971Chr01:40064572..40064596 (25 bp)
GAGAAGATCGACCATGACTGCTCTG
LOC_Os01g68390
Os.39982.1.S1_at--165--691Chr01:40064559..40064583 (25 bp)
ATGACTGCTCTGGTTTCTCAAAACA
LOC_Os01g68390
Os.39982.1.S1_at--585--5431Chr01:40064366..40064517 (25 bp)
GAACCATCATTCTTGATTCTGCTGC
LOC_Os01g68390
Os.39982.1.S1_at--464--4371Chr01:40064261..40064285 (25 bp)
CCAAGTTCTATCTAAGCGTTCCTAC
LOC_Os01g68390
Os.39982.1.S1_at--851--7111Chr01:40064178..40064202 (25 bp)
GTCAGATCATACTATCCCATGCGGA
LOC_Os01g68390
Os.39982.1.S1_at--109--6531Chr01:40064084..40064108 (25 bp)
GATTTGTCCATTTCTGTACTTCACA
LOC_Os01g68390
Os.39982.1.S1_at--1071--7011Chr01:40064069..40064093 (25 bp)
GTACTTCACAAGCTGCATGGCTGAA
LOC_Os01g68390
Os.39982.1.S1_at--732--9631Chr01:40064015..40064039 (25 bp)
TCAGGCCTGCTTCTTTGTGACACGG
LOC_Os01g68390
Target Sequence 
GACGGGAGGACTTTGGATCATCGCAACTATCTTGAGGCTCAGGGTGACGCAGATATTTTCTTCCCAACCGATTTCTGGCT
TTTGGAGAAGATCGACCATGACTGCTCTGGTTTCTCAAAACAGCAAAAGAACCCCGGTGCATTTAAACCAGTTAAGACGA
GGAGAACCATCATTCTTGATTCTGCTGCCTTCATGGAAGAGTTTGGACTGCCGTTGAAGACTAGGACCAAAGATGGATAT
AATCCACTCCTTGATGATTTCAGGAACACCAAGTTCTATCTAAGCGTTCCTACCCATAACAAGAAATAGTCATCATATAT
TATTTCTTGTTATATTTTAGTCTATTCGTTGGTCAGATCATACTATCCCATGCGGATAAAAATCGACTTTCGCATTCTTT
TAGAGAACAGGAAAGTCTTTTAGTCGACCGAAGAATCGCAAGTTTGATTTGTCCATTTCTGTACTTCACAAGCTGCATGG
CTGAAAAGTGGATTATAGTGTACTACACAGGATGTCAGGCCTGCTTCTTTGTGACACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis