Browse Element(s) Details


Os.39997.2.S1_x_at

Description gb:CF318760
DB_XREF= gi:33690521
DB_XREF=HD--09-A07.g1
CLONE=HD--09-A07
TID=Os.39997.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39997 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g148307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14800NANA12+8461001..8467677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14820Os.47463.1.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14820Os.14491.2.S1_x_at4/1112+8474441..8477468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14830Os.39997.2.S1_a_at11/1112+8484033..8488283hypothetical protein
LOC_Os12g14830OsAffx.19674.1.S1_at9/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.2.S1_x_at7/1112+8484033..8488283hypothetical protein
LOC_Os12g14830Os.39997.1.S1_x_at2/1112+8484033..8488283hypothetical protein
LOC_Os12g14840Os.32811.1.S1_at11/1112+8492235..8495385expressed protein
LOC_Os12g14850OsAffx.19675.1.S1_x_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.19675.1.S1_at11/1112+8504109..8504357hypothetical protein
LOC_Os12g14850OsAffx.13714.1.S1_x_at1/1112+8504109..8504357hypothetical protein
LOC_Os12g14860OsAffx.31743.1.S1_at11/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.20705.2.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14860OsAffx.29146.1.S1_x_at1/1112+8505266..8507303hypothetical protein
LOC_Os12g14870NANA12+8511297..8511725hypothetical protein
LOC_Os12g14880OsAffx.31744.1.S1_at11/1112+8513001..8513687hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39997.2.S1_x_at--442--9213Chr12:8487096..8487120 (25 bp)
TCCAAACACTTGAGATCCATCCCTG
LOC_Os12g14830
Os.39997.2.S1_x_at--729--2473Chr12:8487100..8487124 (25 bp)
AACACTTGAGATCCATCCCTGCATG
LOC_Os12g14830
Os.39997.2.S1_x_at--1118--8894Chr12:8487106..8487130 (25 bp)
TGAGATCCATCCCTGCATGTCACAC
LOC_Os12g14830
Os.39997.2.S1_x_at--73--3073Chr12:8487137..8487161 (25 bp)
AATCTCAAGTATCCAAGCCTCCCAT
LOC_Os12g14830
Os.39997.2.S1_x_at--1036--10671Chr12:8487175..8487199 (25 bp)
TTCCACATGCATGGGTTCGTGAGGG
LOC_Os12g14830
Os.39997.2.S1_x_at--887--10071Chr12:8487215..8487239 (25 bp)
TAGGTGGAACTTGCTGCTGGTTTCA
LOC_Os12g14830
Os.39997.2.S1_x_at--1087--5013Chr12:8487240..8487264 (25 bp)
GCAGCAAAACAACCCTGTTTTTCCT
LOC_Os12g14830
Os.39997.2.S1_x_at--900--10351NONE
TTTTTCCTCCACTTGATTCGGAGAT
NONE
Os.39997.2.S1_x_at--189--4191NONE
CCCTCAGCGGGAAGGTGAGGACTAT
NONE
Os.39997.2.S1_x_at--519--3471Chr06:14213152..14213176 (25 bp)
CAGGGAATGATCTTCTGCTGCCTTC
NONE
Os.39997.2.S1_x_at--707--7611Chr06:14213150..14213174 (25 bp)
GGGAATGATCTTCTGCTGCCTTCAG
NONE
Target Sequence 
TCCAAACACTTGAGATCCATCCCTGCATGTCACACCACANCAATCTCAAGTATCCAAGCCTCCCATCCATCCAAATATCT
TCCACATGCATGGGTTCGTGAGGGAGATCNGGAAGAAAATAGGTGGAACTTGCTGCTGGTTTCAGCAGCAAAACAACCCT
GTTTTTCCTCCACTTGATTCGGAGATTCCGGAGAGCGCTGAAGCAGAACCAGAGCCTGAGTGTGACTACCCTCAGCGGGA
AGGTGAGGACTATGGCGTAGAATTGTGCTTCATGTGTGGTCACTGTTCTGCCGGGGGCGACAAGGGCAGGGAATGATCTT
CTGCTGCCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39997.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis