Browse Element(s) Details


Os.40015.1.S1_at

Description gb:AY344495.1
DB_XREF= gi:33591119
TID=Os.40015.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40015 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF13 mRNA, complete cds.
PROD=heat shock factor RHSF13
FL= gb:AK069479.1 gb:AY344495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4359011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43540Os.9338.1.S1_at9/111+25264524..25269730SGS domain containing protein, expressed
LOC_Os01g43550Os.57382.1.S1_at11/111+25272130..25274142WRKY DNA binding domain containing protein, expressed
LOC_Os01g43560OsAffx.11455.2.A1_at11/111+25278833..25279621hypothetical protein
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40015.1.S1_at--280--831Chr01:25295235..25295259 (25 bp)
ATGGACGGCACCTACTGGTGGACGA
LOC_Os01g43590
Os.40015.1.S1_at--154--2671Chr01:25295292..25295316 (25 bp)
AAGCCCATGACGGTGTTGCCATCCT
LOC_Os01g43590
Os.40015.1.S1_at--727--4831Chr01:25295331..25295355 (25 bp)
GCTAGCTGCGGCGTGCACCAAGTGC
LOC_Os01g43590
Os.40015.1.S1_at--938--8871Chr01:25295399..25295423 (25 bp)
TGAGGCCAAGGTGGAGCCGCCATTC
LOC_Os01g43590
Os.40015.1.S1_at--696--91Chr01:25295420..25295444 (25 bp)
ATTCCCATTCTGTCTACTTGGTCAA
LOC_Os01g43590
Os.40015.1.S1_at--1018--7151Chr01:25295431..25295455 (25 bp)
GTCTACTTGGTCAAGCTTTCTTTTA
LOC_Os01g43590
Os.40015.1.S1_at--1049--131Chr01:25295456..25295480 (25 bp)
ATTAACCTGCCGAATCATGCCCATG
LOC_Os01g43590
Os.40015.1.S1_at--166--9171Chr01:25295473..25295497 (25 bp)
TGCCCATGCACGTAGTAATTCTTCC
LOC_Os01g43590
Os.40015.1.S1_at--382--9751Chr01:25295488..25295512 (25 bp)
TAATTCTTCCATTCCACTTACTGAT
LOC_Os01g43590
Os.40015.1.S1_at--490--8831Chr01:25295509..25295533 (25 bp)
TGATTCAGTCACTCGATCCTACGTA
LOC_Os01g43590
Os.40015.1.S1_at--763--551Chr01:25295524..25295548 (25 bp)
ATCCTACGTACACACTGCCAAGAAA
LOC_Os01g43590
Target Sequence 
ATGGACGGCACCTACTGGTGGACGACGGAGCATCATCATCATCATCATCATCAGATGAAGCCCATGACGGTGTTGCCATC
CTTGGAGCCGCCCACCGCTAGCTGCGGCGTGCACCAAGTGCCGGAGCTCGGGGGTGGCGGCGTGATGGGCTTAACGACGG
ACGGTGAGGCCAAGGTGGAGCCGCCATTCCCATTCTGTCTACTTGGTCAAGCTTTCTTTTAATTAACCTGCCGAATCATG
CCCATGCACGTAGTAATTCTTCCATTCCACTTACTGATTCAGTCACTCGATCCTACGTACACACTGCCAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis