Browse Element(s) Details


Os.40018.1.S1_at

Description gb:AY344492.1
DB_XREF= gi:33591113
TID=Os.40018.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40018 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF10 mRNA, complete cds.
PROD=heat shock factor RHSF10
FL= gb:AB050096.1 gb:AY344492.1 gb:AB050098.1 gb:AK100412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4541011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40018.1.S1_at--498--5471Chr05:26263008..26263032 (25 bp)
GAACTCACAGAGTCTCCAGGTTTTG
LOC_Os05g45410
Os.40018.1.S1_at--1141--7031Chr05:26263107..26263131 (25 bp)
GTAAATTCTGAGATTGCCTCCTCCA
LOC_Os05g45410
Os.40018.1.S1_at--236--5551Chr05:26263158..26263182 (25 bp)
GAAACTGAAGCTTCGCATGGACCGA
LOC_Os05g45410
Os.40018.1.S1_at--98--851Chr05:26263174..26263198 (25 bp)
ATGGACCGACCAACGATGTGTTTTG
LOC_Os05g45410
Os.40018.1.S1_at--79--10411Chr05:26263194..26263218 (25 bp)
TTTTGGGAGCGGTTCCTCACAGAGA
LOC_Os05g45410
Os.40018.1.S1_at--1018--1351Chr05:26263214..26263238 (25 bp)
AGAGACTCCACGGTCATGTTTGGAT
LOC_Os05g45410
Os.40018.1.S1_at--211--5031Chr05:26263381..26263405 (25 bp)
GCAGTAATACCATTTGCGCGGATTC
LOC_Os05g45410
Os.40018.1.S1_at--648--4571Chr05:26263396..26263420 (25 bp)
GCGCGGATTCATAGTTCGTGTGTAA
LOC_Os05g45410
Os.40018.1.S1_at--280--6211Chr05:26263458..26263482 (25 bp)
GAGGCTTGCGTGTTACTTTACAGAT
LOC_Os05g45410
Os.40018.1.S1_at--979--10431Chr05:26263521..26263545 (25 bp)
TTATGATTCTGTTCTATCCGCTGAC
LOC_Os05g45410
Os.40018.1.S1_at--984--3691Chr05:26263534..26263558 (25 bp)
CTATCCGCTGACTACTGTGCATAAA
LOC_Os05g45410
Target Sequence 
GAACTCACAGAGTCTCCAGGTTTTGTGCAGAGTCCAGAGCTGCCAATGGCAGAGATTCGTGAAGATATCCATGTGACAAG
ATACCCAACACAAGCTGATGTAAATTCTGAGATTGCCTCCTCCACTGATACTTCACAAGATGGCACGTCAGAAACTGAAG
CTTCGCATGGACCGACCAACGATGTGTTTTGGGAGCGGTTCCTCACAGAGACTCCACGGTCATGTTTGGATGAGTCAGAA
AGACAAGAGTCTCCCAAGGACGATGTAAAAGCAGAATTAGGCTGCAATGGCTTCCATCACCGGGAGAAGGTTGATCAGAT
CACCGAGCAAATGGGGCACCTTGCTTCAGCCGAGCAGACTCTGCATACCTGATGCAGTAATACCATTTGCGCGGATTCAT
AGTTCGTGTGTAAATTAGCGAAGATGTAAATTATAGCTTAGATCGGATTAGAGGCTTGCGTGTTACTTTACAGATTTCAA
CCTTTTATTAGATTACAATAGGTCTTTCACAATTTATGATTCTGTTCTATCCGCTGACTACTGTGCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis