Browse Element(s) Details


Os.40021.1.S1_a_at

Description gb:AY344489.1
DB_XREF= gi:33591107
TID=Os.40021.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40021 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds.
PROD=heat shock factor RHSF7
FL= gb:AY344489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0663011/11Heat shock factor protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed
LOC_Os03g06640NANA3+3326739..3330529expressed protein
LOC_Os03g06654Os.34206.1.S1_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06654Os.34206.2.S1_x_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40021.1.S1_a_at--472--10031Chr03:3323103..3323127 (25 bp)
TAGACATAGTGCCATTTCTCAACCC
LOC_Os03g06630
Os.40021.1.S1_a_at--155--1691Chr03:3323138..3323162 (25 bp)
AGCCAGGGCGATCAACTCGAGTCGA
LOC_Os03g06630
Os.40021.1.S1_a_at--299--6111Chr03:3323156..3323180 (25 bp)
GAGTCGACATTGCTGTTTGATCCAA
LOC_Os03g06630
Os.40021.1.S1_a_at--605--10751Chr03:3323172..3323196 (25 bp)
TTGATCCAAGGCCATTTGCTGAACT
LOC_Os03g06630
Os.40021.1.S1_a_at--793--10451Chr03:3323231..3323255 (25 bp)
TTAGCACTGAACATCCAGGGTCTTG
LOC_Os03g06630
Os.40021.1.S1_a_at--711--3071Chr03:3323300..3323324 (25 bp)
AATCAGGCTAGCAACGAAACCGAGT
LOC_Os03g06630
Os.40021.1.S1_a_at--679--4051Chr03:3323320..3323344 (25 bp)
CGAGTTAACCGACGACTTCTGGGAG
LOC_Os03g06630
Os.40021.1.S1_a_at--131--6511Chr03:3323409..3323433 (25 bp)
GATATGTCGATGCATTAGCGCAGAA
LOC_Os03g06630
Os.40021.1.S1_a_at--533--6431Chr03:3323467..3323491 (25 bp)
GATCAAGTGGCTCCGATTTGTCCAA
LOC_Os03g06630
Os.40021.1.S1_a_at--811--7271Chr03:3323486..3323510 (25 bp)
GTCCAACCATTTTTGTGATAGCTCT
LOC_Os03g06630
Os.40021.1.S1_a_at--1118--171Chr03:3323565..3323589 (25 bp)
ATTTATATTGCGGATCCGGCGTGCT
LOC_Os03g06630
Target Sequence 
TAGACATAGTGCCATTTCTCAACCCCGGGGAGGTCAGCCAGGGCGATCAACTCGAGTCGACATTGCTGTTTGATCCAAGG
CCATTTGCTGAACTGAATGATGAGCCTGCAAAGTCTGAACTGGAGAATTTAGCACTGAACATCCAGGGTCTTGGGAAGGG
CAAGCAGGATGTCAACAGGACTCGAAATCAGCCACGAAATCAGGCTAGCAACGAAACCGAGTTAACCGACGACTTCTGGG
AGGAGCTTCTGAATGAAGGAGCAAGAGATGATGCTGGGATTCCAGGGATGGAGCGAAGAAGACCTAGATATGTCGATGCA
TTAGCGCAGAAGCTGGGTTATCTAAGCAATAGTAGCCAAAAGTAGATCAAGTGGCTCCGATTTGTCCAACCATTTTTGTG
ATAGCTCTTATTGTATATCGGTGTAATTGTATTATAGTGATAGTTTTATAGCGATAGGTCCAATTTATATTGCGGATCCG
GCGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40021.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis