Browse Element(s) Details


Os.40031.3.S1_x_at

Description gb:AK099550.1
DB_XREF= gi:32984759
TID=Os.40031.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033G18, full insert sequence.
FL= gb:AK099550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2848011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28460Os.51607.1.A1_at11/114+16655894..16657487Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os04g28470NANA4+16672992..16675162retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g28480Os.40031.1.S1_a_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480OsAffx.26210.1.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_x_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.2.S1_x_at10/114+16677398..16682701expressed protein
LOC_Os04g28490OsAffx.3931.1.S1_at11/114+16688479..16689379hypothetical protein
LOC_Os04g28500NANA4+16690233..16690616hypothetical protein
LOC_Os04g28520Os.8413.2.A1_a_at10/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_x_at7/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_at3/114+16695262..16702466fatty acyl coA reductase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40031.3.S1_x_at--566--4791Chr04:16679554..16679578 (25 bp)
GCTCCGTGAGTTGTTTGTCACACTT
LOC_Os04g28480
Os.40031.3.S1_x_at--179--3311Chr04:16679536..16679560 (25 bp)
CACACTTCTCCTCTTTTGCAATGTT
LOC_Os04g28480
Os.40031.3.S1_x_at--19--2991Chr04:16679517..16679541 (25 bp)
AATGTTACAGATCCATTGGCTTTAT
LOC_Os04g28480
Os.40031.3.S1_x_at--536--7691Chr04:16679470..16679494 (25 bp)
GGGTGAGGACTACATGCATCGCATT
LOC_Os04g28480
Os.40031.3.S1_x_at--856--671Chr04:16679436..16679460 (25 bp)
ATGACATACCATTCTACACCTTTTA
LOC_Os04g28480
Os.40031.3.S1_x_at--193--10471Chr04:16679346..16679370 (25 bp)
TTACCACACTTTAACTTGCCTGAGC
LOC_Os04g28480
Os.40031.3.S1_x_at--868--5871Chr04:16679325..16679349 (25 bp)
GAGCCCATTCTTACCAGTGCATGTG
LOC_Os04g28480
Os.40031.3.S1_x_at--242--3171Chr04:16679166..16679190 (25 bp)
AATTGCATTGGTCACACATTCTTTG
LOC_Os04g28480
Os.40031.3.S1_x_at--56--4891Chr04:16679064..16679088 (25 bp)
GCTTTGGCTGTTGCATCATCTAGCA
LOC_Os04g28480
Os.40031.3.S1_x_at--83--451Chr04:16679047..16679071 (25 bp)
ATCTAGCATTGCTGCACTTCTTCTG
LOC_Os04g28480
Os.40031.3.S1_x_at--745--3571Chr04:16679004..16679028 (25 bp)
CATTCCCGCTTCAAAATACCATTAG
LOC_Os04g28480
Target Sequence 
GCTCCGTGAGTTGTTTGTCACACTTCTCCTCTTTTGCAATGTTACAGATCCATTGGCTTTATTTGAAGAACATTTTTCTA
GAATGGGTGAGGACTACATGCATCGCATTGGGCATAGTATGACATACCATTCTACACCTTTTACACAACATGTTAGATCA
TTTGTTCTTGCTGAAATTGACAAGTTGCTTAGAAATTCTGGATATAGCTTACCACACTTTAACTTGCCTGAGCCCATTCT
TACCAGTGCATGTGCAGTTGGCAATAGACTTTTAACAGATGAACAAGCTTATGATATTGATAGGATATCAGTAGAAGCAG
CTGAACAACTCAATCAATTGAATCTGAATCAAAAACATGTTTATGATGTTGTCCTTCAATCAGTCAACAATTGCATTGGT
CACACATTCTTTGTGCATGGCTATGGTGGTACCGGGAAGACATTTCTTTGGAATGCTTTGCTTAATGCTGTTAGAGCTCA
AGGAAAAATTGCTTTGGCTGTTGCATCATCTAGCATTGCTGCACTTCTTCTGCCAGGTGGTCGCACACCGCATTCCCGCT
TCAAAATACCATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40031.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis