Browse Element(s) Details


Os.40082.1.A1_x_at

Description gb:CF327697
DB_XREF= gi:33803643
DB_XREF=NACL--02-E16.g1
CLONE=NACL--02-E16
TID=Os.40082.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.40082 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g172797/11exonuclease family protein, expressed
LOC_Os03g387903/11Uncharacterised protein family containing protein, expressed
LOC_Os06g220302/11AT hook motif family protein, expressed
LOC_Os10g255601/11myosin, putative, expressed
LOC_Os08g452201/11expressed protein
LOC_Os04g202701/11Mono-ADP-ribosyltransferase sirtuin-6, putative, expressed
LOC_Os09g073201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17300Os.30881.3.S1_x_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17300Os.30881.3.S1_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17310NANA1+9953822..9955628retrotransposon, putative, centromere-specific
LOC_Os01g17320Os.16889.1.S1_a_at11/111+9959446..9963493DNA-binding protein, putative, expressed
LOC_Os01g17330Os.446.1.S1_at11/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os01g17330OsAffx.31630.1.S1_at3/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0030048biological_processactin filament-based movement
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005677cellular_componentchromatin silencing complex
GO:0005737cellular_componentcytoplasm
GO:0009706cellular_componentchloroplast inner membrane
GO:0016459cellular_componentmyosin
GO:0003677molecular_functionDNA binding
GO:0003774molecular_functionmotor activity
GO:0004527molecular_functionexonuclease activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40082.1.A1_x_at--941--10311NONE
TTTAACAGTGTGAAATTTAGGTCAT
NONE
Os.40082.1.A1_x_at--905--5591Chr01:9940939..9940963 (25 bp)
GAAATTTAGGTCATCAGTGTCATGA
LOC_Os01g17279
Os.40082.1.A1_x_at--996--10431Chr01:9940934..9940958 (25 bp)
TTAGGTCATCAGTGTCATGACCCGA
LOC_Os01g17279
Os.40082.1.A1_x_at--555--1031Chr01:9940932..9940956 (25 bp)
AGGTCATCAGTGTCATGACCCGAGG
LOC_Os01g17279
Os.40082.1.A1_x_at--296--4112Chr11:25273255..25273274 (20 bp)
ATCAGTGTCATGACCCGAGGCCATG
NONE
Os.40082.1.A1_x_at--302--694Chr06:17464827..17464851 (25 bp)
ATGACCCGAGGCCATGACAGGATAA
NONE
Os.40082.1.A1_x_at--146--6234Chr12:6694030..6694051 (22 bp)
GAGGCCATGACAGGATAAACACCGT
NONE
Os.40082.1.A1_x_at--490--2751NONE
AAGAACACTGTTGGGAGGGAGACAT
NONE
Os.40082.1.A1_x_at--932--5491NONE
GAACACTGTTGGGAGGGAGACATTA
NONE
Os.40082.1.A1_x_at--860--2171NONE
ACACTGTTGGGAGGGAGACATTAGA
NONE
Os.40082.1.A1_x_at--179--57119Chr09:3627107..3627128 (22 bp)
GACTAATTGATATTCATTGCTTCAC
LOC_Os09g07320
Target Sequence 
TTTAACAGTGTGAAATTTAGGTCATCAGTGTCATGACCCGAGGCCATGACAGGATAAACACCGTNGGGAAGATAGCCGGG
NGGCGTCGGNTNNTGGAGAAGGGNATGTAGATTTAGGNTAGGGAGAAGAACACTGTTGGGAGGGAGACATTAGACTAATT
GATATTCATTGCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40082.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis