Browse Element(s) Details


Os.40093.2.S1_x_at

Description gb:AK064117.1
DB_XREF= gi:32974135
TID=Os.40093.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-B07, full insert sequence.
FL= gb:AK064117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2904010/11Ankyrin-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29010OsAffx.12262.1.S1_at10/112+17161547..17166870Cupin family protein
LOC_Os02g29020OsAffx.12263.1.S1_at11/112+17169352..17170023Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29040Os.40093.1.S1_at11/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29040Os.40093.2.S1_x_at10/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29050NANA2+17203880..17205976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29060NANA2+17207503..17208818retrotransposon protein, putative, unclassified
LOC_Os02g29070OsAffx.12264.1.S1_at11/112+17211664..17212593Protein kinase domain containing protein
LOC_Os02g29080OsAffx.24488.1.S1_at11/112+17214377..17214919hypothetical protein
LOC_Os02g29080OsAffx.30320.1.S1_x_at1/112+17214377..17214919hypothetical protein
LOC_Os02g29090Os.55156.1.S1_at11/112+17217744..17221458expressed protein
LOC_Os02g29100OsAffx.24489.1.S1_at11/112+17223153..17227085Heat shock protein STI, putative

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005515molecular_functionprotein binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40093.2.S1_x_at--69--791Chr02:17191957..17192458 (25 bp)
ATGTGCAGGATGACCCCATGTACAA
LOC_Os02g29040
Os.40093.2.S1_x_at--358--6031Chr02:17191885..17191909 (25 bp)
GAGAGGACTATCTTACTGCCACAAA
LOC_Os02g29040
Os.40093.2.S1_x_at--885--2191NONE
ACAAAACTCTACACTATGGCGACGA
NONE
Os.40093.2.S1_x_at--904--10071Chr02:17191070..17191091 (22 bp)
TATGGCGACGAATCTTGAACCTGAA
LOC_Os02g29040
Os.40093.2.S1_x_at--583--1291Chr02:17190977..17191001 (25 bp)
AGATGCTCACCTCTGCAGGATGTTG
LOC_Os02g29040
Os.40093.2.S1_x_at--955--991Chr02:17190961..17190985 (25 bp)
AGGATGTTGTGTCCCGATTGGCCAA
LOC_Os02g29040
Os.40093.2.S1_x_at--954--7571Chr02:17190919..17190942 (24 bp)
GGGCTGCTCACATGTTCTTAAAGGA
LOC_Os02g29040
Os.40093.2.S1_x_at--967--9771Chr02:17190801..17190825 (25 bp)
TAAGGCTTGCGATGCATTTCTTGAT
LOC_Os02g29040
Os.40093.2.S1_x_at--498--551Chr02:17190537..17190763 (25 bp)
ATGGTCTACGGGAGGCTTTCAAATC
LOC_Os02g29040
Os.40093.2.S1_x_at--666--1411Chr02:17190507..17190531 (25 bp)
AGAAATCTCGTGCTGCCTGAATTAC
LOC_Os02g29040
Os.40093.2.S1_x_at--282--10371Chr02:17190384..17190408 (25 bp)
TTTTGCAACTGGCACGGCTTTGTAA
LOC_Os02g29040
Target Sequence 
ATGTGCAGGATGACCCCATGTACAAAATAAGACCAGCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGAC
TATCTTACTGCCACAAAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATGGAACTTGTACTCGAATAGGAGCATT
TGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTGCAGGATGTTGTGTCCCGATTGGCCAA
AGGCCTGCTACAGGGAAGGGGCTGCTCACATGTTCTTAAAGGACTGATAAGGCTTGCGATGCATTTCTTGATGGTCTTAA
ATTGGACCCAGCGAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGCTGCCTGAA
TTACCTGTCAGTTCAAGAATTACATGTCAGTTCAAGACTCAAAACTTGTACTATGTAATTAACTCAATCTGGAGTCCGGA
AAACAAGAACCTGGTAAAAACCTTTTGCAACTGGCACGGCTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40093.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis