Browse Element(s) Details


Os.40291.1.A1_x_at

Description gb:CF336225
DB_XREF= gi:33820841
DB_XREF=JMT--06-D07.g1
CLONE=JMT--06-D07
TID=Os.40291.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40291 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:RKMUB2 (A.thaliana) RKMUB2 ribulose-bisphosphate carboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g194701/11Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19440OsAffx.7641.1.S1_at11/1112+11293171..11293621hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450Os.34295.1.S1_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19450OsAffx.12179.1.S1_x_at1/1112+11296872..11299519hypothetical protein
LOC_Os12g19460Os.14919.1.S1_at5/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19460OsAffx.29313.1.S1_at1/1112+11303871..11309716transposon protein, putative, Mutator sub-class
LOC_Os12g19470Os.10959.1.S2_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.10959.1.S1_at11/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19470Os.40291.1.A1_x_at1/1112+11317733..11319883Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g19480NANA12+11324158..11330239retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19490NANA12+11331755..11333193retrotransposon protein, putative, unclassified
LOC_Os12g19510OsAffx.7642.1.S1_at9/1112+11335451..11337728hypothetical protein
LOC_Os12g19519NANA12+11340954..11341806NA

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Gene Ontology Classification
GO idTypeName
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009573cellular_componentribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40291.1.A1_x_at--376--4191NONE
CCCCTGAGGCCTTGGTTGGCATCAT
NONE
Os.40291.1.A1_x_at--849--4191NONE
CCCTGAGGCCTTGGTTGGCATCATT
NONE
Os.40291.1.A1_x_at--609--4271NONE
CCTGAGGCCTTGGTTGGCATCATTG
NONE
Os.40291.1.A1_x_at--93--3871NONE
CTGAGGCCTTGGTTGGCATCATTGG
NONE
Os.40291.1.A1_x_at--703--8871NONE
TGAGGCCTTGGTTGGCATCATTGGC
NONE
Os.40291.1.A1_x_at--246--6231NONE
GAGGCCTTGGTTGGCATCATTGGCT
NONE
Os.40291.1.A1_x_at--611--8431NONE
GGCCTTGGTTGGCATCATTGGCTTT
NONE
Os.40291.1.A1_x_at--158--8291Chr12:11318347..11318370 (24 bp)
GGCATCATTGGCTTTGACAACGTTA
LOC_Os12g19470
Os.40291.1.A1_x_at--666--4871NONE
GCTTTGGTTCCTTGGGGCAGGTTCT
NONE
Os.40291.1.A1_x_at--181--8571NONE
TGGTTCCTTGGGGCAGGTTCTTTCT
NONE
Os.40291.1.A1_x_at--677--4151NONE
CGCCCTGCCGTTGTTGCAAAAGTAT
NONE
Target Sequence 
CCCCTGAGGCCTTGGTTGGCATCATTGGCTTTGACAACGTTAGGCNGGNGCAGTTAATCAGTTTCTTNGGGTATAACCCC
CCGGGTTGCAAGGAGTCAGGNGGCAANTAAGGGCTTTGGTTCCTTGGGGCAGGTTCTTTCTTTTTCTNNNNNTTTTTTTT
TGGGGGGCCCGNGTNAANCNGCANGNAATTGTTTTTTCGNGNTCCGCCCTGCCGTTGTTGCAAAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40291.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis