Browse Element(s) Details


Os.40446.1.S1_at

Description gb:AK122009.1
DB_XREF= gi:37991632
TID=Os.40446.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ligand-gated channel-like protein (P0446F04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111F13, full insert sequence.
FL= gb:AK122009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g013109/11Glutamate receptor 3.4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01270OsAffx.26147.4.S1_s_at11/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270OsAffx.26147.2.S1_x_at9/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270Os.44572.1.S1_x_at8/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01280OsAffx.28220.1.S1_s_at11/117+172041..175550hypothetical protein
LOC_Os07g01290NANA7+177299..179836transposon protein, putative, Mutator sub-class
LOC_Os07g01300Os.51588.1.S1_x_at11/117+180814..181542expressed protein
LOC_Os07g01300Os.51588.1.S1_at11/117+180814..181542expressed protein
LOC_Os07g01300OsAffx.8749.1.S1_at4/117+180814..181542expressed protein
LOC_Os07g01310Os.40446.1.S1_at9/117+189343..194728Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g01320Os.6121.1.S1_at11/117+194377..198122expressed protein
LOC_Os07g01330OsAffx.29536.3.S1_x_at4/117+206625..207089transposon protein, putative, unclassified
LOC_Os07g01340Os.30269.1.S1_at11/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g01340Os.23988.1.A1_at10/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40446.1.S1_at--776--9151Chr07:194151..194175 (25 bp)
TGCGCCAGTACTTCAGATACCACGG
LOC_Os07g01310
Os.40446.1.S1_at--705--2931Chr07:194213..194237 (25 bp)
AAGGCAACGCCGTTCCCGGTGGATG
LOC_Os07g01310
Os.40446.1.S1_at--126--551Chr07:194282..194306 (25 bp)
ATCCGGGACCTGATGACGTTCGTGG
LOC_Os07g01310
Os.40446.1.S1_at--1008--4711Chr07:194377..194401 (25 bp)
GCTGGACATGGACAGTCACAGTCAC
LOC_Os07g01310
Os.40446.1.S1_at--485--10391Chr07:194453..194477 (25 bp)
TTTTCCTCCGTCTAATAACCAATGC
LOC_Os07g01310
Os.40446.1.S1_at--690--2651Chr07:194469..194493 (25 bp)
AACCAATGCATTCCATTAACCTCAC
LOC_Os07g01310
Os.40446.1.S1_at--274--10491NONE
TTAACCTCACATGCTAACCCAAATA
NONE
Os.40446.1.S1_at--655--8211Chr07:194512..194536 (25 bp)
GGAATTCCTACTAACCAATATCAAG
LOC_Os07g01310
Os.40446.1.S1_at--775--6431NONE
GATCATCATCATATTCATCTCTGTA
NONE
Os.40446.1.S1_at--927--9791Chr07:194607..194631 (25 bp)
TAAGCGTCCAGTATTATCCGATGAT
LOC_Os07g01310
Os.40446.1.S1_at--575--1471Chr07:194704..194728 (25 bp)
AGAATTGGTGTTTCCTTGAGACTTC
LOC_Os07g01310
Target Sequence 
TGCGCCAGTACTTCAGATACCACGGCCACGCCGACATCGACGACGACGACGACAGCGAGAACAAGGCAACGCCGTTCCCG
GTGGATGGCGGCGAGAGGATGAGCTCGCGGCGGCCGGCGCGGCTGGCCAGCATCCGGGACCTGATGACGTTCGTGGACAT
GAANGAGGCGGAGGTGAAGCGGAGGAAGAAGATGATGAACGAAGACAGCAGCAGCTGCGGGAGGCGGCTGGACATGGACA
GTCACAGTCACAGGTCCATGCCCACCTCCGCCAACGCCAACGCCGCCCCGCCCTCTTCTTCCTTTTCCTCCGTCTAATAA
CCAATGCATTCCATTAACCTCACATGCTAACCCAAATACTAGGAATTCCTACTAACCAATATCAAGAATGATCANAGATC
ATCATCATATTCATCTCTGTAATGGGAAATAGGCAACTAACTAATACTAGTATATTTAAGCGTCCAGTATTATCCGATGA
TTAGCCGTGNAAGTTCACTTGTACTACACAATCATGGATCTGAAACAGAAACTCTATACCAAGGGNAGNNGGGAGAATTG
GTGTTTCCTTGAGACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis