Browse Element(s) Details


Os.41122.1.S1_at

Description gb:NM_193055.1
DB_XREF= gi:34913193
GEN=P0506F02.17
TID=Os.41122.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C74688(E50368)~similar to amelogenin precursor (P0506F02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST C74688(E50368)~similar to amelogenin precursor (P0506F02.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g435105/1140S ribosomal protein S9, putative
LOC_Os07g435192/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g43540OsAffx.16697.1.S1_at10/117+26042848..26045797origin recognition complex subunit 6, putative, expressed
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed
LOC_Os07g43570Os.6898.1.S1_at11/117+26057670..26061466Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41122.1.S1_at--1114--4211Chr07:26036866..26036885 (20 bp)
CCGTATAGATGGTAAGACTTTCAAG
LOC_Os07g43519
Os.41122.1.S1_at--487--4711Chr07:26036833..26036857 (25 bp)
GCGGCCATATGAGAAGGAGCGTCTT
LOC_Os07g43519
Os.41122.1.S1_at--64--3871Chr07:26036629..26036828 (25 bp)
CTGAGCTGAAGCTGACCATCGTCTT
NONE
Os.41122.1.S1_at--388--1611Chr07:26036620..26036640 (21 bp)
AGCTGACCATCGTCTTCAAGAATGG
NONE
Os.41122.1.S1_at--1056--7071Chr07:26036586..26036610 (25 bp)
GTCAATCCACCATGCACGTGTCCTT
NONE
Os.41122.1.S1_at--327--651Chr07:26036575..26036599 (25 bp)
ATGCACGTGTCCTTATCAGGCAGCA
NONE
Os.41122.1.S1_at--42--8211Chr07:26034925..26034949 (25 bp)
GGAAGGCAGCTCGTCAACATTCCAT
LOC_Os07g43510
Os.41122.1.S1_at--120--3791Chr07:26034916..26034940 (25 bp)
CTCGTCAACATTCCATCATTCATTG
LOC_Os07g43510
Os.41122.1.S1_at--705--3591Chr07:26034900..26034924 (25 bp)
CATTCATTGTGAGGCTTGAGTCTGA
LOC_Os07g43510
Os.41122.1.S1_at--1014--7171Chr07:26034881..26034905 (25 bp)
GTCTGAGAAGCACATCGCCTTCTCC
LOC_Os07g43510
Os.41122.1.S1_at--732--5071Chr07:26034837..26034861 (25 bp)
GCAGCCCTGCTGTAAGAGTGAAGAG
LOC_Os07g43510
Target Sequence 
CCGTATAGATGGTAAGACTTTCAAGAAGCCAAGGCGGCCATATGAGAAGGAGCGTCTTGATGCTGAGCTGAAGCTGACCA
TCGTCTTCAAGAATGGCATGGCCAAGTCAATCCACCATGCACGTGTCCTTATCAGGCAGCACCACATCAGGGTGGGAAGG
CAGCTCGTCAACATTCCATCATTCATTGTGAGGCTTGAGTCTGAGAAGCACATCGCCTTCTCCCTCACCAGCCCGCTGGG
CGGCAGCCCTGCTGTAAGAGTGAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis