Browse Element(s) Details


Os.41257.1.S1_at

Description gb:CA764188
DB_XREF= gi:27546094
DB_XREF=AF53-Rpf_02_J08_T7_022.ab1
CLONE=C0000608
TID=Os.41257.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.18 (P0686E09.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4304011/11expressed protein
LOC_Os09g357401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43030Os.11466.1.S1_at11/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43030Os.46676.1.A1_x_at1/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41257.1.S1_at--721--6051Chr01:24879521..24879545 (25 bp)
GAGTTCCTTGGTGAAGCGAGTGACC
LOC_Os01g43040
Os.41257.1.S1_at--222--2012Chr09:20558081..20558105 (25 bp)
ACTCGGGAGTTGAGTCACTCTACAT
LOC_Os09g35740
Os.41257.1.S1_at--478--971Chr01:24879414..24879438 (25 bp)
AGGAGCAGAATCATACCGTGGTACT
LOC_Os01g43040
Os.41257.1.S1_at--63--8192Chr09:20558156..20558180 (25 bp)
GGAAGCTTGCCTTCTAGAACAAGTA
NONE
Os.41257.1.S1_at--283--6911Chr01:24879354..24879378 (25 bp)
GTATCGACACCATCTATGAGCTCTC
LOC_Os01g43040
Os.41257.1.S1_at--231--5911Chr01:24879342..24879361 (20 bp)
GAGCTCTCTTTCTTCTGCTGATGAA
LOC_Os01g43040
Os.41257.1.S1_at--778--6011Chr01:24879250..24879274 (25 bp)
GAGAGATATCTTGCGCTAAAACTGT
LOC_Os01g43040
Os.41257.1.S1_at--413--5351Chr01:24879211..24879235 (25 bp)
GAAGACTCTGGGTGTTGGCATTTAA
LOC_Os01g43040
Os.41257.1.S1_at--589--10492Chr09:20558342..20558366 (25 bp)
TTAACTTCACTGCAATGGTCGGATG
NONE
Os.41257.1.S1_at--546--291Chr01:24879163..24879187 (25 bp)
ATCTTTGTTTTGCACTCCGTTTTAT
LOC_Os01g43040
Os.41257.1.S1_at--668--2611Chr01:24879103..24879127 (25 bp)
AACCCTTCATTATTTTGAGCACTCG
LOC_Os01g43040
Target Sequence 
GAGTTCCTTGGTGAAGCGAGTGACCGGAGAACGAATACTAAGGTTGATGGTGAATATGGTGGAGATAGTGGNGATGACTC
GGGAGTTGAGTCACTCTACATTGAGTGAGGAGCAGAATCATACCGTGGTACTAAACATCAACTAAGGAAGCTTGCCTTCT
AGAACAAGTATCGACACCATCTATGAGCTCTCTTTCTTCTGCTGATGAATTAACAGTTGGATGCAGCAATGCTGATTGAG
GAGGAGATATTACATCCTAAGGCTAAAATTAGAGAGATATCTTGCGCTAAAACTGTTGATATTGTCAAATGAAGACTCTG
GGTGTTGGCATTTAACTTCACTGCAATGGTCGGATGGCATCTTTGTTTTGCACTCCGTTTTATGAAGAAGGAACAAAGAG
AGAGGCATGAGAACTGAAAACCCTTCATTATTTTGAGCACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis