Browse Element(s) Details


Os.4147.1.S1_at

Description gb:AK071587.1
DB_XREF= gi:32981610
TID=Os.4147.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4147 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for signal recognition particle subunit 14
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101P16, full insert sequence.
FL= gb:AK071587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5322011/11Signal recognition particle 14 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os04g53240Os.14109.1.S1_at8/114+31497308..31500105Autophagy-related protein 8 precursor, putative, expressed
LOC_Os04g53250OsAffx.14394.1.S1_at10/114+31502654..31504041hypothetical protein
LOC_Os04g53250Os.55517.1.S1_x_at1/114+31502654..31504041hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4147.1.S1_at--272--2651Chr04:31480738..31480762 (25 bp)
AAGCCCTTTTTTGGCCACAGGCCTG
LOC_Os04g53220
Os.4147.1.S1_at--1112--5671Chr04:31480783..31480807 (25 bp)
GACATTATCCTCCATTTTACTCTTA
LOC_Os04g53220
Os.4147.1.S1_at--1023--3091Chr04:31480834..31480858 (25 bp)
AATACCTTTATAGAGCTGTGCCGTC
LOC_Os04g53220
Os.4147.1.S1_at--658--4731Chr04:31480848..31480872 (25 bp)
GCTGTGCCGTCGACATTAGCAATTT
LOC_Os04g53220
Os.4147.1.S1_at--744--8571Chr04:31480885..31480909 (25 bp)
TGGTTGTCTAGATGTAAGCCGCCCT
LOC_Os04g53220
Os.4147.1.S1_at--830--8711Chr04:31480897..31480921 (25 bp)
TGTAAGCCGCCCTGGAATTTTCTAT
LOC_Os04g53220
Os.4147.1.S1_at--569--9831Chr04:31480945..31480969 (25 bp)
TAAACTGTGCCTGATCTGATCGTCA
LOC_Os04g53220
Os.4147.1.S1_at--150--1031Chr04:31481113..31481137 (25 bp)
AGGTATGTCTGTGTCACGATTCCCA
LOC_Os04g53220
Os.4147.1.S1_at--294--6591Chr04:31481166..31481190 (25 bp)
GATTCCATGTTTAGGTTGGTGCATA
LOC_Os04g53220
Os.4147.1.S1_at--195--7731Chr04:31481183..31481207 (25 bp)
GGTGCATAAGCAAACGGCGTACTAC
LOC_Os04g53220
Os.4147.1.S1_at--296--4651Chr04:31481199..31481223 (25 bp)
GCGTACTACTATGGGCCTATTTGGT
LOC_Os04g53220
Target Sequence 
AAGCCCTTTTTTGGCCACAGGCCTGNAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCT
GCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTCTAGA
TGTAAGCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGT
GCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTA
TCTGGANNNNNNNNNNNNNNNAATTTTGTTTTTCTGGTTGGGGAGAAAAAGTGTGAAGGTATGTCTGTGTCACGATTCCC
ACATGCAAGTGGTGATCAGAATATAAGCAGATTCCATGTTTAGGTTGGTGCATAAGCAAACGGCGTACTACTATGGGCCT
ATTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis