Browse Element(s) Details


Os.41637.1.S1_at

Description gb:CA766063
DB_XREF= gi:27547990
DB_XREF=AF53-Rpf_09_P06_T7_031.ab1
CLONE=C0003438
TID=Os.41637.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative multidrug resistance protein 1 homolog (P0431H09.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5008011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed
LOC_Os01g50090NANA1+29109928..29112744retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50100Os.11800.1.S1_s_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.39411.1.A1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.11800.1.S1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50110Os.55528.1.S1_at11/111+29123363..29124496Myb-related protein Zm38, putative, expressed
LOC_Os01g50120Os.49669.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50120Os.57098.1.S1_at11/111+29125731..29131287expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41637.1.S1_at--617--8231Chr01:29106544..29106568 (25 bp)
GGCAAGCAATGCTCATGAGTTCATA
LOC_Os01g50080
Os.41637.1.S1_at--72--1231Chr01:29106561..29106585 (25 bp)
AGTTCATATCAAGCTTGCCTCAGGG
LOC_Os01g50080
Os.41637.1.S1_at--1013--4911Chr01:29106573..29106597 (25 bp)
GCTTGCCTCAGGGATATAACACTAC
LOC_Os01g50080
Os.41637.1.S1_at--622--7951Chr01:29106642..29106666 (25 bp)
GGATAGCTATAGCAAGGGCCATCTT
LOC_Os01g50080
Os.41637.1.S1_at--737--3091Chr01:29106679..29106703 (25 bp)
AATACTTCTATTGGATGAGGCTACA
LOC_Os01g50080
Os.41637.1.S1_at--1017--1731Chr01:29106773..29106797 (25 bp)
ACCATTGTGGTAGCACACCGTCTGT
LOC_Os01g50080
Os.41637.1.S1_at--547--2151Chr01:29106787..29106811 (25 bp)
ACACCGTCTGTCCACGATTAAAGGG
LOC_Os01g50080
Os.41637.1.S1_at--656--7131Chr01:29106827..29106851 (25 bp)
GTCATCAAGGATGGTTCAATCGCTG
LOC_Os01g50080
Os.41637.1.S1_at--672--5511Chr01:29106851..29106875 (25 bp)
GAAAAGGGACAACATGACTCTCTCA
LOC_Os01g50080
Os.41637.1.S1_at--686--8611Chr01:29106886..29106910 (25 bp)
TGGTGGAGTCTATGCATCGTTGGTA
LOC_Os01g50080
Os.41637.1.S1_at--670--8551Chr01:29106906..29106930 (25 bp)
TGGTAGACCTACACTCAAAGACAAC
LOC_Os01g50080
Target Sequence 
GGCAAGCAATGCTCATGAGTTCATATCAAGCTTGCCTCAGGGATATAACACTACTGTCGGAGAAAGAGGAACACAACTAT
CTGGTGGGCAAAAGCAACGGATAGCTATAGCAAGGGCCATCTTGAAGGACCCAAAAATACTTCTATTGGATGAGGCTACA
AGTGCCCTTGATGCTGAATCAGAGCGCATTGTTCAAGATGCACTAGATCAAGTTATGGTAAGCAGGACCACCATTGTGGT
AGCACACCGTCTGTCCACGATTAAAGGGGCAGATGTGATTGCAGTCATCAAGGATGGTTCAATCGCTGAAAAGGGACAAC
ATGACTCTCTCATGAGGATCAATGGTGGAGTCTATGCATCGTTGGTAGACCTACACTCAAAGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis